Factsheet for AT1G60900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G60830.2	Thale cress	nucleus	17.83	94.59
CDY12868	Canola	mitochondrion	33.28	85.96
Bra040973.1-P	Field mustard	nucleus	38.88	84.19
CDY55407	Canola	nucleus	15.79	83.04
CDY40492	Canola	nucleus	21.05	82.67
PGSC0003DMT400040069	Potato	cytosol	43.46	82.32
CDY12869	Canola	nucleus	64.18	76.21
CDY40481	Canola	nucleus	65.87	75.19
Bra027119.1-P	Field mustard	nucleus	62.14	74.54
Bra031477.1-P	Field mustard	nucleus	74.53	73.91
CDY46188	Canola	nucleus	74.53	73.91
CDY03767	Canola	nucleus	74.36	72.16
HORVU5Hr1G090000.2	Barley	nucleus	47.71	70.78
GSMUA_Achr4P16510_001	Banana	nucleus	56.2	70.13
PGSC0003DMT400033041	Potato	nucleus	64.86	68.7
Solyc02g085570.2.1	Tomato	nucleus	64.86	68.46
Solyc02g062920.2.1	Tomato	nucleus	63.33	66.61
GSMUA_Achr4P11020_001	Banana	nucleus	64.52	65.97
KRH64800	Soybean	nucleus	66.21	65.0
TraesCS4D01G143400.3	Wheat	nucleus	60.44	64.85
KRH56450	Soybean	nucleus	66.04	64.3
HORVU4Hr1G029030.3	Barley	nucleus	59.93	64.18
TraesCS4B01G145600.4	Wheat	nucleus	61.97	64.15
TraesCS4D01G150000.4	Wheat	nucleus	61.8	63.53
AT4G36690.1	Thale cress	nucleus	61.63	63.35
EES08974	Sorghum	nucleus	58.57	63.3
VIT_13s0139g00410.t01	Wine grape	cytosol	7.3	63.24
Os11t0636900-02	Rice	nucleus	60.1	61.67
CDY40493	Canola	nucleus	29.37	61.57
TraesCS4A01G165000.4	Wheat	nucleus	60.95	61.37
PGSC0003DMT400000919	Potato	nucleus	62.65	60.99
TraesCSU01G068100.3	Wheat	nucleus	59.93	60.86
Solyc12g008750.1.1	Tomato	nucleus	62.65	60.79
TraesCS4A01G171800.3	Wheat	nucleus	59.76	60.59
KXG28995	Sorghum	nucleus	60.44	59.33
CDY55589	Canola	mitochondrion	24.62	57.77
HORVU4Hr1G038850.14	Barley	nucleus	58.74	57.19
Bra031341.1-P	Field mustard	nucleus	24.11	56.57
Bra010656.1-P	Field mustard	mitochondrion, plastid	24.28	56.52
HORVU5Hr1G089980.2	Barley	nucleus, plastid	54.33	56.24
TraesCS5A01G366000.1	Wheat	nucleus	56.37	54.79
TraesCS5D01G375600.1	Wheat	nucleus	56.37	54.34
TraesCS5B01G368400.1	Wheat	nucleus	54.5	50.95
KXG29128	Sorghum	nucleus	44.99	41.86
TraesCS2A01G122400.1	Wheat	nucleus	11.04	39.88
TraesCS2B01G144600.1	Wheat	nucleus	10.87	39.26
VIT_13s0139g00390.t01	Wine grape	plasma membrane	10.36	39.1
TraesCS5B01G041900.1	Wheat	nucleus	10.7	37.95
TraesCS5A01G040700.1	Wheat	cytosol	10.53	37.35
TraesCS5D01G071700.1	Wheat	nucleus	9.34	31.98
TraesCS5B01G067400.1	Wheat	nucleus	9.51	29.95
TraesCS5D01G071600.1	Wheat	nucleus	9.51	29.95
Zm00001d007635_P004	Maize	nucleus	24.79	20.74
AT2G33435.1	Thale cress	nucleus	17.66	7.85

Protein Annotations

MapMan:16.4.1.2.11.2	Gene3D:3.30.70.330	EntrezGene:842382	ProteinID:AAG51641.1	ProteinID:AEE33746.1	ArrayExpress:AT1G60900
EnsemblPlantsGene:AT1G60900	RefSeq:AT1G60900	TAIR:AT1G60900	RefSeq:AT1G60900-TAIR-G	EnsemblPlants:AT1G60900.1	TAIR:AT1G60900.1
EMBL:AY140014	Unigene:At.17780	GO:GO:0000243	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005681	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152
GO:GO:0008187	GO:GO:0008380	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016607
GO:GO:0030628	GO:GO:0071004	GO:GO:0089701	InterPro:IPR000504	InterPro:IPR012677	RefSeq:NP_176287.3
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PO:PO:0000293	PFscan:PS50102	PANTHER:PTHR23139	PANTHER:PTHR23139:SF80
UniProt:Q8L716	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	TIGRFAMs:TIGR01642
InterPro:U2AF_lg	UniParc:UPI00001970DE	SEG:seg	:	:	:

Description

U2AF65BSplicing factor U2af large subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q8L716]

Coordinates

chr1:+:22423894..22428053

Molecular Weight (calculated)

66319.3 Da

IEP (calculated)

9.570

GRAVY (calculated)

-1.019

Length

589 amino acids

Sequence
(BLAST)

001: MMSYEGNGDG VAISTENHNE NYISLESSPF HEDSKSRESH DLKKDSSKIS EKDNENGRDK DGNKDRDREK DRDREKSRDR DREKSRDRDR DRERSKDRQR
101: DRHHRDRHRD RSRERSEKRD DLDDDHHRRS RDRDRRRSRD RDREVRHRRR SRSRSRSRSE RRSRSEHRHK SEHRSRSRSR SRSKSKRRSG FDMAPPDMLA
201: ATAVAAAGQV PSVPTTATIP GMFSNMFPMV PGQQLGALPV LPVQAMTQQA TRHARRVYVG GLPPTANEQS VSTFFSQVMS AIGGNTAGPG DAVVNVYINH
301: EKKFAFVEMR SVEEASNAMA LDGIILEGVP VKVRRPTDYN PSLAATLGPS QPNPNLNLGA VGLSSGSTGG LEGPDRIFVG GLPYYFTEVQ IRELLESFGP
401: LRGFNLVKDR ETGNSKGYAF CVYQDPSVTD IACAALNGIK MGDKTLTVRR AIQGAIQPKP EQEEVLLYAQ QQIALQRLMF QPGGTPTKIV CLTQVVTADD
501: LRDDEEYAEI MEDMRQEGGK FGNLVNVVIP RPNPDHDPTP GVGKVFLEYA DVDGSSKARS GMNGRKFGGN QVVAVYYPED KYAQGDYED

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.