Factsheet for TraesCS4A01G171800.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G128600.1
TraesCS1A01G176500.1
TraesCS1A01G314200.1
TraesCS1B01G146600.1
TraesCS1B01G203600.1
TraesCS1B01G326500.1
TraesCS1D01G124800.1
TraesCS1D01G162500.1
TraesCS1D01G314700.1
TraesCS2A01G255800.1
TraesCS2D01G266900.1
TraesCS3A01G328100.1
TraesCS3B01G357600.1
TraesCS3D01G321700.1
TraesCS4A01G355900.1
TraesCS5A01G022300.1
TraesCS5A01G309300.1
TraesCS5B01G310000.1
TraesCS5B01G516200.1
TraesCS5D01G316300.1
TraesCS5D01G516300.1
TraesCS7A01G422700.1
TraesCS7B01G323100.1
TraesCS7D01G415100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36690.1	TraesCS1A01G314200.1	AT1G28360.1	21798944
AT4G36690.1	TraesCS1B01G326500.1	AT1G28360.1	21798944
AT4G36690.1	TraesCS1D01G314700.1	AT1G28360.1	21798944
AT4G36690.1	TraesCS3A01G328100.1	AT1G28360.1	21798944
AT4G36690.1	TraesCS3B01G357600.1	AT1G28360.1	21798944
AT4G36690.1	TraesCS3D01G321700.1	AT1G28360.1	21798944
AT4G36690.1	TraesCS2A01G255800.1	AT2G39760.1	21798944
AT4G36690.1	TraesCS2D01G266900.1	AT2G39760.1	21798944
AT4G36690.1	TraesCS1A01G128600.1	AT3G50670.1	21798944
AT4G36690.1	TraesCS1A01G176500.1	AT3G50670.1	21798944
AT4G36690.1	TraesCS1B01G146600.1	AT3G50670.1	21798944
AT4G36690.1	TraesCS1B01G203600.1	AT3G50670.1	21798944
AT4G36690.1	TraesCS1D01G124800.1	AT3G50670.1	21798944
AT4G36690.1	TraesCS1D01G162500.1	AT3G50670.1	21798944
AT4G36690.1	TraesCS5A01G022300.1	AT5G49400.1	21798944
AT4G36690.1	TraesCS7A01G422700.1	AT5G49400.1	21798944
AT4G36690.1	TraesCS7B01G323100.1	AT5G49400.1	21798944
AT4G36690.1	TraesCS7D01G415100.1	AT5G49400.1	21798944
AT4G36690.1	TraesCS4A01G355900.1	AT5G51910.1	21798944
AT4G36690.1	TraesCS5A01G309300.1	AT5G51910.1	21798944
AT4G36690.1	TraesCS5B01G310000.1	AT5G51910.1	21798944
AT4G36690.1	TraesCS5B01G516200.1	AT5G51910.1	21798944
AT4G36690.1	TraesCS5D01G316300.1	AT5G51910.1	21798944
AT4G36690.1	TraesCS5D01G516300.1	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G068100.3	Wheat	nucleus	98.97	99.14
TraesCS4D01G143400.3	Wheat	nucleus	89.5	94.72
HORVU4Hr1G029030.3	Barley	nucleus	85.89	90.73
PGSC0003DMT400040069	Potato	cytosol	42.86	80.06
CDY67096	Canola	mitochondrion	33.39	78.54
CDY12868	Canola	mitochondrion	30.64	78.07
Zm00001d048655_P012	Maize	extracellular, nucleus	70.91	76.44
EES08974	Sorghum	nucleus	71.26	75.96
CDX75589	Canola	mitochondrion	45.09	73.8
Bra040973.1-P	Field mustard	nucleus	33.91	72.43
GSMUA_Achr4P16510_001	Banana	nucleus	58.69	72.25
AT1G60830.2	Thale cress	nucleus	13.25	69.37
CDY55407	Canola	nucleus	12.91	66.96
TraesCS4A01G165000.4	Wheat	nucleus	66.78	66.32
CDY40492	Canola	nucleus	16.87	65.33
VIT_04s0023g01450.t01	Wine grape	nucleus	62.99	64.78
PGSC0003DMT400033041	Potato	nucleus	61.79	64.57
Solyc02g085570.2.1	Tomato	nucleus	61.96	64.52
GSMUA_Achr4P11020_001	Banana	nucleus	63.68	64.24
CDY12869	Canola	nucleus	54.22	63.51
CDY24773	Canola	nucleus	59.72	62.64
Bra010569.1-P	Field mustard	nucleus	59.72	62.64
CDY35472	Canola	nucleus	59.04	62.36
CDY40481	Canola	nucleus	55.25	62.21
Solyc02g062920.2.1	Tomato	nucleus	59.55	61.79
VIT_13s0139g00410.t01	Wine grape	cytosol	7.23	61.76
Bra027119.1-P	Field mustard	nucleus	51.64	61.1
AT1G60900.1	Thale cress	nucleus	60.59	59.76
KRH64800	Soybean	nucleus	61.45	59.5
Bra031477.1-P	Field mustard	nucleus	60.76	59.43
CDY46188	Canola	nucleus	60.76	59.43
AT4G36690.1	Thale cress	nucleus	58.52	59.34
CDY03767	Canola	nucleus	61.1	58.48
Bra040940.1-P	Field mustard	nucleus	56.28	58.19
KRH56450	Soybean	nucleus	60.59	58.18
CDY66742	Canola	nucleus	55.94	57.32
PGSC0003DMT400000919	Potato	nucleus	58.86	56.53
TraesCS5A01G366000.1	Wheat	nucleus	58.35	55.94
Solyc12g008750.1.1	Tomato	nucleus	58.35	55.85
CDY30313	Canola	nucleus	55.59	54.93
CDY40493	Canola	nucleus	25.99	53.74
CDY55589	Canola	mitochondrion	22.72	52.59
Bra010656.1-P	Field mustard	mitochondrion, plastid	22.55	51.78
Bra031341.1-P	Field mustard	nucleus	22.2	51.39
KXG29128	Sorghum	nucleus	51.98	47.71
TraesCS2A01G122400.1	Wheat	nucleus	11.88	42.33
TraesCS5A01G040700.1	Wheat	cytosol	11.88	41.57
VIT_13s0139g00390.t01	Wine grape	plasma membrane	9.81	36.54

Protein Annotations

MapMan:16.4.1.2.11.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006397
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23139	PANTHER:PTHR23139:SF80	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	TIGRFAMs:TIGR01642	EnsemblPlantsGene:TraesCS4A01G171800	EnsemblPlants:TraesCS4A01G171800.3	InterPro:U2AF_lg
TIGR:cd12230	TIGR:cd12231	TIGR:cd12232	SEG:seg	:	:

Description

No Description!

Coordinates

chr4A:+:436379868..436385122

Molecular Weight (calculated)

64825.1 Da

IEP (calculated)

8.669

GRAVY (calculated)

-0.839

Length

581 amino acids

Sequence
(BLAST)

001: MADDNGGGGG DDYVSEAVRP EGDTHTREEG LSKSRDRDRE KDKDKERHRD RDRDRGRDRD RGRDRDLDKD RDRDKDRDRH QRHHRDKREH RDRPDDHDRH
101: RSRDSERRRD RERDGHRRHR SRSRSRSRGR DDHRSRSHSK SKRVSGFDLG PTAQSVLPQF PTIPTPKGNL GSLAPLPPMD AQPTVALMYK EESVLRWIHL
201: RSRLMLPGSS IPGMFPNMLP FAVGQFNPLV MQPQAMTQQA TRHARRVYVG GLPPSANEQS VAIYFNQVMA AIGGNTAGPG DAVLNVYINH DKKFAFVEMR
301: SVEEASNAMA LDGILFEGAP VKVRRPTDYN PSLAAALGPS QPSSNLNLAA VGLTPGSAGG LEGPDRIFVG GLPYYFTEAQ VRELLESFGP LRGFDLVKDR
401: ETGNSKGYAF CVYQDLNVTD IACAALNGIK MGDKTLTVRR ANQGSAQPRP EQESILLQAQ QQVQLQKLVY QVGALPTKVV CLTQVVTADE LKDDEEYEDI
501: MEDMRLEAGK YGNLVKVVIP RPHPSGEPVS GVGKVFLEYA DVDGSTKAKT AMHGRKFGGN PVVAVFYPEN KFADEDYDAA A

Best Arabidopsis Sequence Match ( AT1G60900.1 )
(BLAST)

001: MMSYEGNGDG VAISTENHNE NYISLESSPF HEDSKSRESH DLKKDSSKIS EKDNENGRDK DGNKDRDREK DRDREKSRDR DREKSRDRDR DRERSKDRQR
101: DRHHRDRHRD RSRERSEKRD DLDDDHHRRS RDRDRRRSRD RDREVRHRRR SRSRSRSRSE RRSRSEHRHK SEHRSRSRSR SRSKSKRRSG FDMAPPDMLA
201: ATAVAAAGQV PSVPTTATIP GMFSNMFPMV PGQQLGALPV LPVQAMTQQA TRHARRVYVG GLPPTANEQS VSTFFSQVMS AIGGNTAGPG DAVVNVYINH
301: EKKFAFVEMR SVEEASNAMA LDGIILEGVP VKVRRPTDYN PSLAATLGPS QPNPNLNLGA VGLSSGSTGG LEGPDRIFVG GLPYYFTEVQ IRELLESFGP
401: LRGFNLVKDR ETGNSKGYAF CVYQDPSVTD IACAALNGIK MGDKTLTVRR AIQGAIQPKP EQEEVLLYAQ QQIALQRLMF QPGGTPTKIV CLTQVVTADD
501: LRDDEEYAEI MEDMRQEGGK FGNLVNVVIP RPNPDHDPTP GVGKVFLEYA DVDGSSKARS GMNGRKFGGN QVVAVYYPED KYAQGDYED

Arabidopsis Description

U2AF65BSplicing factor U2af large subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q8L716]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.