Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 1
- peroxisome 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS5D01G316300.1 | Wheat | nucleus | 91.12 | 92.22 |
TraesCS5B01G310000.1 | Wheat | cytosol, nucleus, peroxisome | 91.72 | 91.45 |
EER99208 | Sorghum | nucleus | 56.51 | 58.59 |
Zm00001d006165_P001 | Maize | nucleus | 57.1 | 58.48 |
HORVU5Hr1G080210.1 | Barley | cytosol | 39.94 | 49.45 |
Os09t0521300-00 | Rice | nucleus | 54.14 | 48.03 |
VIT_16s0022g02480.t01 | Wine grape | nucleus | 15.38 | 30.77 |
TraesCS2A01G376000.1 | Wheat | plastid | 17.75 | 29.27 |
TraesCS6A01G233800.1 | Wheat | plastid | 17.46 | 29.06 |
CDY27099 | Canola | nucleus | 22.78 | 27.6 |
GSMUA_Achr3P12320_001 | Banana | cytosol | 15.98 | 26.73 |
CDX91612 | Canola | nucleus | 22.49 | 26.39 |
Bra022568.1-P | Field mustard | cytosol | 23.08 | 26.26 |
AT5G51910.1 | Thale cress | nucleus | 22.19 | 25.6 |
TraesCS4A01G355900.1 | Wheat | nucleus | 22.19 | 25.34 |
KRH35393 | Soybean | nucleus | 22.19 | 24.12 |
KRG91429 | Soybean | nucleus | 23.08 | 23.93 |
TraesCS6A01G412800.1 | Wheat | mitochondrion | 13.61 | 23.23 |
CDX95656 | Canola | nucleus | 20.12 | 23.21 |
TraesCS6A01G306500.1 | Wheat | nucleus | 27.22 | 22.77 |
CDY53888 | Canola | nucleus | 20.41 | 22.19 |
Bra000395.1-P | Field mustard | nucleus | 20.41 | 22.19 |
VIT_15s0048g01150.t01 | Wine grape | nucleus | 21.89 | 21.83 |
PGSC0003DMT400088049 | Potato | cytosol | 17.16 | 21.48 |
PGSC0003DMT400094424 | Potato | cytosol | 15.38 | 21.22 |
TraesCS4A01G222700.1 | Wheat | nucleus, plastid | 23.96 | 21.04 |
Bra004929.1-P | Field mustard | nucleus | 20.12 | 20.99 |
CDX74756 | Canola | nucleus | 20.12 | 20.92 |
Solyc03g006800.1.1 | Tomato | nucleus | 20.12 | 20.86 |
CDY18910 | Canola | nucleus | 19.82 | 20.62 |
KRH48289 | Soybean | nucleus | 20.41 | 20.6 |
KRH03994 | Soybean | nucleus | 20.71 | 20.59 |
KRH65181 | Soybean | nucleus | 20.41 | 20.54 |
KRH57263 | Soybean | nucleus | 21.01 | 20.52 |
TraesCS3A01G436100.1 | Wheat | nucleus, plastid | 20.41 | 20.23 |
PGSC0003DMT400062327 | Potato | nucleus | 21.3 | 19.67 |
AT2G45680.1 | Thale cress | cytosol | 20.41 | 19.38 |
TraesCS5A01G121800.1 | Wheat | nucleus | 23.08 | 18.62 |
Solyc08g080150.1.1 | Tomato | nucleus | 18.93 | 17.3 |
VIT_02s0025g04590.t01 | Wine grape | nucleus | 21.01 | 17.27 |
PGSC0003DMT400058534 | Potato | nucleus | 18.64 | 16.84 |
Protein Annotations
EnsemblPlants:TraesCS5A01G309300.1 | EnsemblPlantsGene:TraesCS5A01G309300 | InterPro:IPR017887 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | PANTHER:PTHR31072 |
PANTHER:PTHR31072:SF19 | PFAM:PF03634 | PFscan:PS51369 | SEG:seg | MapMan:15.5.19 | : |
Description
No Description!
Coordinates
chr5A:-:521743815..521744831
Molecular Weight (calculated)
34497.3 Da
IEP (calculated)
4.831
GRAVY (calculated)
-0.340
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MESQLQGNGE QATDARYHDA PSAAPVPASN APLAIAVVPA AAHGPIVPKP EQAPGEFLGG LAVALPPRNR DRHTKVEGRG RRIRMAAPCA ARVAQLTREL
101: GHKTDGDTIR WLLQQSEPAI VAATGTGTVP AIATTVDGVL RIPTESASAA GADGAGPASK RRKLQPTRAA GGAGPLVGAP PAAYYPVAAD PLLQGNGAIS
201: VSSGLAPVSA AAAPAGGGIP FFTIRVPASG DGKQMVSPAG MWMLQQPPAA GGAPNQPMQY WPFPPNPAEF NNFPGAQAIN VANYQQQPCY SPMQFVAAGG
301: EPQDQQQADG RSEGADGQTQ GLEDDYDGEA LTDSSSEE
101: GHKTDGDTIR WLLQQSEPAI VAATGTGTVP AIATTVDGVL RIPTESASAA GADGAGPASK RRKLQPTRAA GGAGPLVGAP PAAYYPVAAD PLLQGNGAIS
201: VSSGLAPVSA AAAPAGGGIP FFTIRVPASG DGKQMVSPAG MWMLQQPPAA GGAPNQPMQY WPFPPNPAEF NNFPGAQAIN VANYQQQPCY SPMQFVAAGG
301: EPQDQQQADG RSEGADGQTQ GLEDDYDGEA LTDSSSEE
001: MATIQKLEEV AGKDQTLRAV DLTIINGVRN VETSRPFQVN PTVSLEPKAE PVMPSFSMSL APPSSTGPPL KRASTKDRHT KVEGRGRRIR MPATCAARIF
101: QLTRELGHKS DGETIRWLLE NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD AVSASSGLAP IATTTTIQPP
201: QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
301: ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH
101: QLTRELGHKS DGETIRWLLE NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD AVSASSGLAP IATTTTIQPP
201: QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
301: ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH
Arabidopsis Description
TCP9Transcription factor TCP9 [Source:UniProtKB/Swiss-Prot;Acc:O64647]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.