Factsheet for VIT_02s0025g04590.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57263	Soybean	nucleus	49.88	59.25
KRH03994	Soybean	nucleus	47.45	57.35
VIT_15s0048g01150.t01	Wine grape	nucleus	46.96	56.93
PGSC0003DMT400058534	Potato	nucleus	47.2	51.87
Solyc08g080150.1.1	Tomato	nucleus	45.74	50.81
VIT_16s0022g02480.t01	Wine grape	nucleus	15.82	38.46
GSMUA_Achr3P12320_001	Banana	cytosol	18.73	38.12
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	25.79	33.33
GSMUA_Achr11P...	Banana	nucleus	18.25	33.19
GSMUA_Achr4P27220_001	Banana	nucleus	17.76	33.18
TraesCS4A01G355900.1	Wheat	nucleus	22.63	31.42
GSMUA_Achr8P00050_001	Banana	cytoskeleton, cytosol, peroxisome	25.79	30.9
Zm00001d031725_P001	Maize	nucleus	26.28	30.86
VIT_10s0042g00170.t01	Wine grape	nucleus	18.98	30.59
GSMUA_Achr5P03320_001	Banana	cytosol	13.87	30.16
TraesCS5B01G516200.1	Wheat	cytosol, nucleus, peroxisome	25.55	30.09
OQU80770	Sorghum	nucleus	26.28	30.08
VIT_08s0040g01600.t01	Wine grape	nucleus, plastid	14.84	29.9
TraesCS5D01G516300.1	Wheat	nucleus	24.82	29.65
Os08t0544800-01	Rice	nucleus	26.03	28.69
VIT_14s0068g01690.t01	Wine grape	nucleus	20.19	28.04
HORVU5Hr1G117990.1	Barley	cytosol, mitochondrion, nucleus	25.3	27.73
VIT_01s0026g02200.t01	Wine grape	nucleus	22.14	25.78
VIT_17s0000g06020.t01	Wine grape	nucleus	21.41	23.91
VIT_18s0117g00340.t01	Wine grape	nucleus	19.46	22.54
HORVU5Hr1G080210.1	Barley	cytosol	14.6	21.98
EER99208	Sorghum	nucleus	17.03	21.47
TraesCS5D01G316300.1	Wheat	nucleus	17.27	21.26
TraesCS5B01G310000.1	Wheat	cytosol, nucleus, peroxisome	17.52	21.24
TraesCS5A01G309300.1	Wheat	cytosol, nucleus, peroxisome	17.27	21.01
Zm00001d006165_P001	Maize	nucleus	16.55	20.61
VIT_12s0035g00690.t01	Wine grape	nucleus, plastid	22.63	20.22
Os09t0521300-00	Rice	nucleus	18.25	19.68

Protein Annotations

EntrezGene:100249539	wikigene:100249539	MapMan:15.5.19	ProteinID:CCB58409	ProteinID:CCB58409.1	UniProt:F6HUI6
EMBL:FN596251	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	EntrezGene:LOC100249539
wikigene:LOC100249539	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF15	InterPro:TF_TCP_subgr
InterPro:Transcription_factor_TCP	UniParc:UPI00021088B9	ArrayExpress:VIT_02s0025g04590	EnsemblPlantsGene:VIT_02s0025g04590	EnsemblPlants:VIT_02s0025g04590.t01	unigene:Vvi.1317
RefSeq:XP_002282409	RefSeq:XP_002282409.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:+:4139943..4141512

Molecular Weight (calculated)

43501.6 Da

IEP (calculated)

6.632

GRAVY (calculated)

-0.296

Length

411 amino acids

Sequence
(BLAST)

001: MASLQEHEID QDDEVGTSDL SSSAGEPEEE NNANDNGMSK PSSSDQTTTF QALSMKEEPV DSEPDAEQKP QAPSIGVVPV IQMQMPMPIP MPMPVSSGRR
101: SSTKDRHTKV EGRGRRIRIP ATCAARIFQL TRELGHKSDG ETVRWLLEHA EQAIIEATGT GTVPAIAVSV GGTLKIPTSS SSNPEGEAPK KRKRPANSEF
201: YDVNDGVSVS SGLAPVGATA VAAAAPQGLV PIWAVGNAGM MIPPNAVAAG TFWMIPPTAT PVAGPPNQPQ LWTISPSVSP VFNMSARPIS SFVSATQPGM
301: NHPPALDVRA PPVLCNSATI SATTSTAGAR AAKKSTMAPC VSSTTTTTNT SATKPQMLRD FSLEIYDKKE LQFMGRSGNQ QTQSSKIFVL PCNIHHSSTI
401: KPIFSVYFIV L

Best Arabidopsis Sequence Match ( AT2G45680.1 )
(BLAST)

001: MATIQKLEEV AGKDQTLRAV DLTIINGVRN VETSRPFQVN PTVSLEPKAE PVMPSFSMSL APPSSTGPPL KRASTKDRHT KVEGRGRRIR MPATCAARIF
101: QLTRELGHKS DGETIRWLLE NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD AVSASSGLAP IATTTTIQPP
201: QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
301: ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH

Arabidopsis Description

TCP9Transcription factor TCP9 [Source:UniProtKB/Swiss-Prot;Acc:O64647]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.