Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX95656 | Canola | nucleus | 46.9 | 54.27 |
| Bra000395.1-P | Field mustard | nucleus | 49.56 | 54.02 |
| CDY53888 | Canola | nucleus | 48.97 | 53.38 |
| KRH48289 | Soybean | nucleus | 52.51 | 53.13 |
| KRH65181 | Soybean | nucleus | 52.51 | 52.98 |
| CDX74756 | Canola | nucleus | 50.74 | 52.92 |
| CDY18910 | Canola | nucleus | 50.74 | 52.92 |
| Bra004929.1-P | Field mustard | nucleus | 50.44 | 52.78 |
| AT2G45680.1 | Thale cress | cytosol | 53.98 | 51.4 |
| VIT_02s0025g04590.t01 | Wine grape | nucleus | 56.93 | 46.96 |
| VIT_16s0022g02480.t01 | Wine grape | nucleus | 20.06 | 40.24 |
| GSMUA_Achr11P... | Banana | nucleus | 24.78 | 37.17 |
| GSMUA_Achr3P12320_001 | Banana | cytosol | 22.12 | 37.13 |
| GSMUA_Achr4P27220_001 | Banana | nucleus | 23.6 | 36.36 |
| PGSC0003DMT400094424 | Potato | cytosol | 25.96 | 35.92 |
| GSMUA_Achr11P... | Banana | cytosol, peroxisome, plastid | 33.04 | 35.22 |
| PGSC0003DMT400088049 | Potato | cytosol | 27.43 | 34.44 |
| VIT_08s0040g01600.t01 | Wine grape | nucleus, plastid | 20.35 | 33.82 |
| TraesCS4A01G355900.1 | Wheat | nucleus | 29.2 | 33.45 |
| Zm00001d031725_P001 | Maize | nucleus | 33.92 | 32.86 |
| OQU80770 | Sorghum | nucleus | 34.51 | 32.59 |
| GSMUA_Achr8P00050_001 | Banana | cytoskeleton, cytosol, peroxisome | 32.74 | 32.36 |
| VIT_10s0042g00170.t01 | Wine grape | nucleus | 23.89 | 31.76 |
| GSMUA_Achr5P03320_001 | Banana | cytosol | 17.7 | 31.75 |
| TraesCS5D01G516300.1 | Wheat | nucleus | 32.15 | 31.69 |
| TraesCS5B01G516200.1 | Wheat | cytosol, nucleus, peroxisome | 32.45 | 31.52 |
| Os08t0544800-01 | Rice | nucleus | 33.63 | 30.56 |
| HORVU5Hr1G117990.1 | Barley | cytosol, mitochondrion, nucleus | 32.45 | 29.33 |
| VIT_14s0068g01690.t01 | Wine grape | nucleus | 23.89 | 27.36 |
| VIT_17s0000g06020.t01 | Wine grape | nucleus | 28.02 | 25.82 |
| VIT_01s0026g02200.t01 | Wine grape | nucleus | 26.55 | 25.5 |
| VIT_18s0117g00340.t01 | Wine grape | nucleus | 26.25 | 25.07 |
| HORVU5Hr1G080210.1 | Barley | cytosol | 19.17 | 23.81 |
| EER99208 | Sorghum | nucleus | 22.42 | 23.31 |
| TraesCS5A01G309300.1 | Wheat | cytosol, nucleus, peroxisome | 21.83 | 21.89 |
| TraesCS5D01G316300.1 | Wheat | nucleus | 21.53 | 21.86 |
| TraesCS5B01G310000.1 | Wheat | cytosol, nucleus, peroxisome | 21.83 | 21.83 |
| Zm00001d006165_P001 | Maize | nucleus | 21.24 | 21.82 |
| Os09t0521300-00 | Rice | nucleus | 24.48 | 21.78 |
| VIT_12s0035g00690.t01 | Wine grape | nucleus, plastid | 28.32 | 20.87 |
Protein Annotations
| EntrezGene:100245358 | wikigene:100245358 | MapMan:15.5.19 | ProteinID:CCB61377 | ProteinID:CCB61377.1 | UniProt:F6I360 |
| EMBL:FN596739 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008361 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0048364 | GO:GO:1900056 | InterPro:IPR017887 | EntrezGene:LOC100245358 | wikigene:LOC100245358 |
| PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF15 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP |
| UniParc:UPI0002109EFD | ArrayExpress:VIT_15s0048g01150 | EnsemblPlantsGene:VIT_15s0048g01150 | EnsemblPlants:VIT_15s0048g01150.t01 | RefSeq:XP_002272896 | RefSeq:XP_002272896.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr15:+:15268234..15269562
Molecular Weight (calculated)
36054.0 Da
IEP (calculated)
9.564
GRAVY (calculated)
-0.343
Length
339 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSVQKQEVE EEDDTRAVDL RINGGENAES IDHKKDDNRA PSSDPPSAAQ PQEQPVAAVA AISLKAEPDA EERSPAAPPA MGVVPVAMPM PVQVRRPAPP
101: VKRASTKDRH TKVEGRGRRI RMPATCAARI FQLTRELGHK SDGETIRWLL EHAEPAIIAA TGTGTVPAIA MSVGGTLKIP TTSTATTQEP DPNKKKRKRP
201: ANSEFVDVND AVSVSSGLAP IATPLAPQGL VPMWAIPSNA VGAFWMVPPT TAIAGPSNQP QIWTFPPTAT PLINISARPI SSFVSSMHPT INVASATASA
301: ASTVGVKASK ASSTMMLRDF SLEIYDKQEL QFMSRSSKH
101: VKRASTKDRH TKVEGRGRRI RMPATCAARI FQLTRELGHK SDGETIRWLL EHAEPAIIAA TGTGTVPAIA MSVGGTLKIP TTSTATTQEP DPNKKKRKRP
201: ANSEFVDVND AVSVSSGLAP IATPLAPQGL VPMWAIPSNA VGAFWMVPPT TAIAGPSNQP QIWTFPPTAT PLINISARPI SSFVSSMHPT INVASATASA
301: ASTVGVKASK ASSTMMLRDF SLEIYDKQEL QFMSRSSKH
001: MATIQKLEEV AGKDQTLRAV DLTIINGVRN VETSRPFQVN PTVSLEPKAE PVMPSFSMSL APPSSTGPPL KRASTKDRHT KVEGRGRRIR MPATCAARIF
101: QLTRELGHKS DGETIRWLLE NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD AVSASSGLAP IATTTTIQPP
201: QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
301: ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH
101: QLTRELGHKS DGETIRWLLE NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD AVSASSGLAP IATTTTIQPP
201: QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
301: ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH
Arabidopsis Description
TCP9Transcription factor TCP9 [Source:UniProtKB/Swiss-Prot;Acc:O64647]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.