Factsheet for VIT_10s0042g00170.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g009180.1.1	Tomato	nucleus	70.98	68.05
CDY45760	Canola	nucleus	63.92	67.36
Bra009667.1-P	Field mustard	nucleus	65.49	66.8
Solyc01g008230.2.1	Tomato	nucleus	65.1	66.67
CDX88010	Canola	nucleus	65.88	66.4
Os03t0422702-00	Rice	cytosol, plastid	32.16	65.08
Bra009338.1-P	Field mustard	nucleus	59.22	63.98
Zm00001d018530_P001	Maize	plastid	51.76	63.77
AT5G23280.1	Thale cress	nucleus	62.35	63.6
CDY21536	Canola	nucleus	58.43	63.14
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	59.61	62.3
Os02t0828566-01	Rice	nucleus	56.86	61.44
EES07800	Sorghum	plastid	57.25	60.08
TraesCS6A01G412800.1	Wheat	mitochondrion	44.31	57.07
TraesCS6D01G397000.1	Wheat	mitochondrion	43.92	56.85
TraesCS6B01G462100.1	Wheat	mitochondrion	43.53	56.06
HORVU6Hr1G093960.1	Barley	cytosol, peroxisome	55.69	53.18
PGSC0003DMT400042166	Potato	cytosol	62.35	35.49
VIT_16s0022g02480.t01	Wine grape	nucleus	21.18	31.95
VIT_08s0040g01600.t01	Wine grape	nucleus, plastid	24.71	30.88
VIT_14s0068g01690.t01	Wine grape	nucleus	29.8	25.68
VIT_01s0026g02200.t01	Wine grape	nucleus	34.9	25.21
VIT_15s0048g01150.t01	Wine grape	nucleus	31.76	23.89
VIT_17s0000g06020.t01	Wine grape	nucleus	34.12	23.64
VIT_18s0117g00340.t01	Wine grape	nucleus	31.76	22.82
VIT_12s0035g00690.t01	Wine grape	nucleus, plastid	38.43	21.3
VIT_02s0025g04590.t01	Wine grape	nucleus	30.59	18.98

Protein Annotations

EntrezGene:100253181	wikigene:100253181	MapMan:15.5.19	MapMan:27.1.5.3	ProteinID:CCB52081	ProteinID:CCB52081.1
UniProt:F6HIN5	EMBL:FN595766	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887
EntrezGene:LOC100253181	wikigene:LOC100253181	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF7
InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI00019856ED	ArrayExpress:VIT_10s0042g00170	EnsemblPlantsGene:VIT_10s0042g00170	EnsemblPlants:VIT_10s0042g00170.t01
unigene:Vvi.3609	RefSeq:XP_002268058	RefSeq:XP_002268058.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr10:-:12941756..12943590

Molecular Weight (calculated)

26160.9 Da

IEP (calculated)

10.388

GRAVY (calculated)

-0.234

Length

255 amino acids

Sequence
(BLAST)

001: MSTSDGAANG VTNGAIVDSQ RQQQPGNGAL AVKKPPAKDR HSKVDGRGRR IRMPIICAAR VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTTPAS
101: FSSVSVSVRG GGSTSSAALD QKPSQPLLSP TPFILGKRLR GDDDVDGGAK DEVVAAAAAA AAAAGGFWAV PARPDFGQVW SFAAAAAAAP PEMVVQAPTM
201: ASQPTISGRF MQQPMGEASA ARVGNYLPIA QGHLNLLASL SGAPASSGRR DDDPR

Best Arabidopsis Sequence Match ( AT5G23280.1 )
(BLAST)

001: MSINNNNNNN NNNNDGLMIS SNGALIEQQP SVVVKKPPAK DRHSKVDGRG RRIRMPIICA ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP
101: ASFSTASVSI RGATNSTSLD HKPTSLLGGT SPFILGKRVR ADEDSNNSHN HSSVGKDETF TTTPAGFWAV PARPDFGQVW SFAGAPQEMF LQQQHHHQQP
201: LFVHQQQQQQ AAMGEASAAR VGNYLPGHLN LLASLSGGSP GSDRREEDPR

Arabidopsis Description

TCP7Transcription factor TCP7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMX2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.