Factsheet for Solyc01g008230.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008230.2.1
Solyc02g062920.2.1
Solyc02g063150.2.1
Solyc02g085570.2.1
Solyc02g085950.2.1
Solyc03g034220.2.1
Solyc03g116320.2.1
Solyc04g009180.1.1
Solyc06g061020.2.1
Solyc06g075310.2.1
Solyc08g005910.2.1
Solyc08g007120.2.1
Solyc08g077460.2.1
Solyc09g098120.2.1
Solyc11g072410.1.1
Solyc12g008750.1.1
Solyc12g096260.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G08330.1	Solyc09g098120.2.1	AT2G31985.1	21798944
AT5G08330.1	Solyc03g116320.2.1	AT3G47620.1	21798944
AT5G08330.1	Solyc06g061020.2.1	AT4G17680.1	21798944
AT5G08330.1	Solyc08g007120.2.1	AT4G17680.1	21798944
AT5G08330.1	Solyc08g077460.2.1	AT4G17680.1	21798944
AT5G08330.1	Solyc02g062920.2.1	AT4G36690.1	21798944
AT5G08330.1	Solyc02g085570.2.1	AT4G36690.1	21798944
AT5G08330.1	Solyc12g008750.1.1	AT4G36690.1	21798944
AT5G08330.1	Solyc08g005910.2.1	AT5G07840.1	21798944
AT5G08330.1	Solyc12g096260.1.1	AT5G07840.1	21798944
AT5G08330.1	Solyc01g008230.2.1	AT5G08330.1	21798944
AT5G08330.1	Solyc04g009180.1.1	AT5G08330.1	21798944
AT5G08330.1	Solyc02g063150.2.1	AT5G38420.1	21798944
AT5G08330.1	Solyc02g085950.2.1	AT5G38420.1	21798944
AT5G08330.1	Solyc03g034220.2.1	AT5G38420.1	21798944
AT5G08330.1	Solyc06g075310.2.1	AT5G60340.1	21798944
AT5G08330.1	Solyc11g072410.1.1	AT5G60340.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g009180.1.1	Tomato	nucleus	70.28	65.79
VIT_10s0042g00170.t01	Wine grape	nucleus	66.67	65.1
CDY40752	Canola	cytosol	44.98	63.28
KRG89108	Soybean	nucleus, plastid	57.43	61.64
Bra029366.1-P	Field mustard	cytosol	42.97	60.8
Os03t0422702-00	Rice	cytosol, plastid	30.52	60.32
KRH36141	Soybean	nucleus	59.04	59.76
AT5G23280.1	Thale cress	nucleus	59.44	59.2
KRH40904	Soybean	nucleus	56.63	59.0
KRH40902	Soybean	nucleus	56.63	58.75
CDY46951	Canola	nucleus	53.41	57.83
CDY40799	Canola	nucleus	53.01	57.39
KRG90619	Soybean	nucleus	55.42	57.02
Zm00001d018530_P001	Maize	plastid	46.99	56.52
AT5G08330.1	Thale cress	nucleus	53.41	55.65
Os02t0828566-01	Rice	nucleus	52.21	55.08
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	53.41	54.51
TraesCS6A01G412800.1	Wheat	mitochondrion	42.17	53.03
TraesCS6D01G397000.1	Wheat	mitochondrion	41.77	52.79
EES07800	Sorghum	plastid	51.41	52.67
TraesCS6B01G462100.1	Wheat	mitochondrion	41.77	52.53
PGSC0003DMT400042166	Potato	cytosol	91.97	51.12
HORVU6Hr1G093960.1	Barley	cytosol, peroxisome	53.82	50.19
Solyc02g094290.1.1	Tomato	cytosol	22.49	49.56
Solyc09g008030.1.1	Tomato	plastid	24.1	29.85
Solyc06g065190.1.1	Tomato	nucleus	38.96	29.85
Solyc02g068200.1.1	Tomato	nucleus	29.72	27.21
Solyc11g020670.1.1	Tomato	nucleus	35.74	23.8
Solyc06g070900.2.1	Tomato	nucleus	38.96	23.32
Solyc03g116320.2.1	Tomato	nucleus	37.35	22.74
Solyc03g006800.1.1	Tomato	nucleus	29.32	22.39
Solyc05g007420.1.1	Tomato	nucleus	33.73	21.93
Solyc01g103780.2.1	Tomato	nucleus	35.34	19.78
Solyc08g080150.1.1	Tomato	nucleus	29.32	19.73

Protein Annotations

MapMan:15.5.19	MapMan:27.1.5.3	UniProt:G3BGV5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EMBL:GQ496333	InterPro:IPR017887	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF7
EnsemblPlantsGene:Solyc01g008230.2	EnsemblPlants:Solyc01g008230.2.1	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI00022A26AA	SEG:seg

Description

TCP transcription factor 15 [Source:UniProtKB/TrEMBL;Acc:G3BGV5]

Coordinates

chr1:-:2359382..2360678

Molecular Weight (calculated)

26087.6 Da

IEP (calculated)

9.245

GRAVY (calculated)

-0.316

Length

249 amino acids

Sequence
(BLAST)

001: MSTSVEQNGA VLLDSTTGSG GGVANSNGAL TVKKPPAKDR HSKVDGRGRR IRMPIVCAAR VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTIPAS
101: FSTVSVSLRN SISSVTASAP VDHKLPSPSP SLLHPLISPA PFLLGKRLRS EDDDNGSGDK DVVPSAGFWA VPARPDFGQV WSFAAPSPEI SHSAAAAMNT
201: QPSRFLQQQM EEASAGRVGN YFPIAQGHLN LLASLSGSGS GPRRDDDGQ

Best Arabidopsis Sequence Match ( AT5G23280.1 )
(BLAST)

001: MSINNNNNNN NNNNDGLMIS SNGALIEQQP SVVVKKPPAK DRHSKVDGRG RRIRMPIICA ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP
101: ASFSTASVSI RGATNSTSLD HKPTSLLGGT SPFILGKRVR ADEDSNNSHN HSSVGKDETF TTTPAGFWAV PARPDFGQVW SFAGAPQEMF LQQQHHHQQP
201: LFVHQQQQQQ AAMGEASAAR VGNYLPGHLN LLASLSGGSP GSDRREEDPR

Arabidopsis Description

TCP7Transcription factor TCP7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMX2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.