Factsheet for Solyc04g009180.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008230.2.1
Solyc02g062920.2.1
Solyc02g063150.2.1
Solyc02g085570.2.1
Solyc02g085950.2.1
Solyc03g034220.2.1
Solyc03g116320.2.1
Solyc04g009180.1.1
Solyc06g061020.2.1
Solyc06g075310.2.1
Solyc08g005910.2.1
Solyc08g007120.2.1
Solyc08g077460.2.1
Solyc09g098120.2.1
Solyc11g072410.1.1
Solyc12g008750.1.1
Solyc12g096260.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G08330.1	Solyc09g098120.2.1	AT2G31985.1	21798944
AT5G08330.1	Solyc03g116320.2.1	AT3G47620.1	21798944
AT5G08330.1	Solyc06g061020.2.1	AT4G17680.1	21798944
AT5G08330.1	Solyc08g007120.2.1	AT4G17680.1	21798944
AT5G08330.1	Solyc08g077460.2.1	AT4G17680.1	21798944
AT5G08330.1	Solyc02g062920.2.1	AT4G36690.1	21798944
AT5G08330.1	Solyc02g085570.2.1	AT4G36690.1	21798944
AT5G08330.1	Solyc12g008750.1.1	AT4G36690.1	21798944
AT5G08330.1	Solyc08g005910.2.1	AT5G07840.1	21798944
AT5G08330.1	Solyc12g096260.1.1	AT5G07840.1	21798944
AT5G08330.1	Solyc01g008230.2.1	AT5G08330.1	21798944
AT5G08330.1	Solyc04g009180.1.1	AT5G08330.1	21798944
AT5G08330.1	Solyc02g063150.2.1	AT5G38420.1	21798944
AT5G08330.1	Solyc02g085950.2.1	AT5G38420.1	21798944
AT5G08330.1	Solyc03g034220.2.1	AT5G38420.1	21798944
AT5G08330.1	Solyc06g075310.2.1	AT5G60340.1	21798944
AT5G08330.1	Solyc11g072410.1.1	AT5G60340.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0042g00170.t01	Wine grape	nucleus	68.05	70.98
Solyc01g008230.2.1	Tomato	nucleus	65.79	70.28
CDY40752	Canola	cytosol	45.11	67.8
KRH36141	Soybean	nucleus	62.03	67.07
KRG90619	Soybean	nucleus	58.65	64.46
KRG89108	Soybean	nucleus, plastid	56.02	64.22
Bra029366.1-P	Field mustard	cytosol	42.48	64.2
Os03t0422702-00	Rice	cytosol, plastid	29.7	62.7
Os02t0828566-01	Rice	nucleus	54.89	61.86
KRH40904	Soybean	nucleus	55.26	61.51
Zm00001d018530_P001	Maize	plastid	47.74	61.35
KRH40902	Soybean	nucleus	55.26	61.25
CDY46951	Canola	nucleus	52.63	60.87
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	55.64	60.66
CDY40799	Canola	nucleus	52.26	60.43
AT5G23280.1	Thale cress	nucleus	56.39	60.0
AT5G08330.1	Thale cress	nucleus	53.38	59.41
EES07800	Sorghum	plastid	52.63	57.61
TraesCS6A01G412800.1	Wheat	mitochondrion	41.35	55.56
TraesCS6D01G397000.1	Wheat	mitochondrion	40.98	55.33
TraesCS6B01G462100.1	Wheat	mitochondrion	40.6	54.55
HORVU6Hr1G093960.1	Barley	cytosol, peroxisome	52.26	52.06
Solyc02g094290.1.1	Tomato	cytosol	21.05	49.56
PGSC0003DMT400042166	Potato	cytosol	63.16	37.5
Solyc06g065190.1.1	Tomato	nucleus	37.59	30.77
Solyc09g008030.1.1	Tomato	plastid	21.43	28.36
Solyc02g068200.1.1	Tomato	nucleus	27.82	27.21
Solyc11g020670.1.1	Tomato	nucleus	34.21	24.33
Solyc03g116320.2.1	Tomato	nucleus	34.96	22.74
Solyc05g007420.1.1	Tomato	nucleus	32.71	22.72
Solyc03g006800.1.1	Tomato	nucleus	26.32	21.47
Solyc06g070900.2.1	Tomato	nucleus	33.46	21.39
Solyc01g103780.2.1	Tomato	nucleus	33.83	20.22
Solyc08g080150.1.1	Tomato	nucleus	26.69	19.19

Protein Annotations

MapMan:15.5.19	MapMan:27.1.5.3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887
UniProt:K4BP74	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF7	EnsemblPlantsGene:Solyc04g009180.1
EnsemblPlants:Solyc04g009180.1.1	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI00027655D8	SEG:seg	:

Description

No Description!

Coordinates

chr4:+:2687517..2688317

Molecular Weight (calculated)

27728.7 Da

IEP (calculated)

10.388

GRAVY (calculated)

-0.274

Length

266 amino acids

Sequence
(BLAST)

001: MSTSAEGNGA IIDPQRQQQQ APTGVGTNGA LTVKKPPVKD RHSKVDGRGR RIRMPIVCAA RVFQLTRELG HKSDGQTIEW LLRQAEPSII AATGTGTIPA
101: SFSTVSVSVR NSTASLVSSL SAPLDQKSSQ MISPAPFILG KRLRSDDENI ENGNKDDVAV AAGAATAVGP TAGFWAVPAR PDFGQIWSFA AAPPPEMMVP
201: TSAAAAAAAA AALSSQSSRF FQQQMGEASA ARVGNYLPMT QGHLNLLASL SGPPQPSSGR RDDDGR

Best Arabidopsis Sequence Match ( AT5G23280.1 )
(BLAST)

001: MSINNNNNNN NNNNDGLMIS SNGALIEQQP SVVVKKPPAK DRHSKVDGRG RRIRMPIICA ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP
101: ASFSTASVSI RGATNSTSLD HKPTSLLGGT SPFILGKRVR ADEDSNNSHN HSSVGKDETF TTTPAGFWAV PARPDFGQVW SFAGAPQEMF LQQQHHHQQP
201: LFVHQQQQQQ AAMGEASAAR VGNYLPGHLN LLASLSGGSP GSDRREEDPR

Arabidopsis Description

TCP7Transcription factor TCP7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMX2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.