Factsheet for AT5G23280.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45760	Canola	nucleus	74.4	76.86
CDX88010	Canola	nucleus	77.2	76.28
Bra009667.1-P	Field mustard	nucleus	75.2	75.2
Bra009338.1-P	Field mustard	nucleus	64.4	68.22
CDY21536	Canola	nucleus	63.6	67.37
AT5G08330.1	Thale cress	nucleus	63.6	66.53
VIT_10s0042g00170.t01	Wine grape	nucleus	63.6	62.35
Solyc01g008230.2.1	Tomato	nucleus	59.2	59.44
Os03t0422702-00	Rice	cytosol, plastid	29.6	58.73
Solyc04g009180.1.1	Tomato	nucleus	60.0	56.39
Zm00001d018530_P001	Maize	plastid	46.4	56.04
TraesCS6D01G397000.1	Wheat	mitochondrion	43.2	54.82
Os02t0828566-01	Rice	nucleus	51.6	54.66
TraesCS6B01G462100.1	Wheat	mitochondrion	43.2	54.55
TraesCS6A01G412800.1	Wheat	mitochondrion	43.2	54.55
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	52.4	53.69
EES07800	Sorghum	plastid	50.4	51.85
HORVU6Hr1G093960.1	Barley	cytosol, peroxisome	52.0	48.69
PGSC0003DMT400042166	Potato	cytosol	57.2	31.92
AT2G37000.1	Thale cress	nucleus, plastid	22.8	30.32
AT3G45150.1	Thale cress	nucleus	18.4	27.88
AT1G35560.1	Thale cress	nucleus, plastid	38.0	27.86
AT5G51910.1	Thale cress	nucleus	30.0	25.6
AT1G72010.1	Thale cress	nucleus, plastid	38.0	25.33
AT5G41030.1	Thale cress	nucleus	24.0	24.69
AT3G27010.1	Thale cress	nucleus	29.6	23.57
AT1G69690.1	Thale cress	nucleus, plastid	30.4	23.38
AT1G58100.1	Thale cress	nucleus	37.2	23.19
AT2G45680.1	Thale cress	cytosol	31.2	21.91
AT3G47620.1	Thale cress	nucleus	34.8	17.79

Protein Annotations

MapMan:15.5.19	MapMan:27.1.5.3	EntrezGene:832392	ProteinID:AED93147.1	EMBL:AK118679	ArrayExpress:AT5G23280
EnsemblPlantsGene:AT5G23280	RefSeq:AT5G23280	TAIR:AT5G23280	RefSeq:AT5G23280-TAIR-G	EnsemblPlants:AT5G23280.1	TAIR:AT5G23280.1
ProteinID:BAB11183.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR017887	RefSeq:NP_197719.1	PFAM:PF03634	PO:PO:0000293	PFscan:PS51369	PANTHER:PTHR31072
PANTHER:PTHR31072:SF7	UniProt:Q9FMX2	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI00000A310D	SEG:seg

Description

TCP7Transcription factor TCP7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMX2]

Coordinates

chr5:+:7842607..7844649

Molecular Weight (calculated)

27062.6 Da

IEP (calculated)

9.808

GRAVY (calculated)

-0.649

Length

250 amino acids

Sequence
(BLAST)

001: MSINNNNNNN NNNNDGLMIS SNGALIEQQP SVVVKKPPAK DRHSKVDGRG RRIRMPIICA ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP
101: ASFSTASVSI RGATNSTSLD HKPTSLLGGT SPFILGKRVR ADEDSNNSHN HSSVGKDETF TTTPAGFWAV PARPDFGQVW SFAGAPQEMF LQQQHHHQQP
201: LFVHQQQQQQ AAMGEASAAR VGNYLPGHLN LLASLSGGSP GSDRREEDPR

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.