Factsheet for Bra009667.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88010	Canola	nucleus	98.0	96.84
Bra026506.1-P	Field mustard	cytosol, mitochondrion, nucleus	70.4	81.48
Bra029366.1-P	Field mustard	cytosol	54.8	77.84
AT5G23280.1	Thale cress	nucleus	75.2	75.2
Bra028662.1-P	Field mustard	nucleus	64.8	70.74
Bra009338.1-P	Field mustard	nucleus	64.4	68.22
Bra005984.1-P	Field mustard	nucleus	63.2	67.52
VIT_10s0042g00170.t01	Wine grape	nucleus	66.8	65.49
Os03t0422702-00	Rice	cytosol, plastid	30.0	59.52
Zm00001d018530_P001	Maize	plastid	48.0	57.97
Os02t0828566-01	Rice	nucleus	54.4	57.63
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	54.8	56.15
TraesCS6B01G462100.1	Wheat	mitochondrion	42.8	54.04
EES07800	Sorghum	plastid	52.4	53.91
TraesCS6D01G397000.1	Wheat	mitochondrion	42.4	53.81
TraesCS6A01G412800.1	Wheat	mitochondrion	42.4	53.54
HORVU6Hr1G093960.1	Barley	cytosol, peroxisome	52.4	49.06
Bra016090.1-P	Field mustard	nucleus	39.6	27.81
Bra025528.1-P	Field mustard	nucleus	24.0	26.79
Bra003986.1-P	Field mustard	cytosol	25.2	25.71
Bra007875.1-P	Field mustard	cytosol	25.2	25.61
Bra008001.1-P	Field mustard	nucleus, plastid	37.6	25.13
Bra004407.1-P	Field mustard	nucleus, plastid	31.6	24.61
Bra039096.1-P	Field mustard	nucleus	27.2	24.46
Bra025244.1-P	Field mustard	nucleus	29.2	23.78
Bra000395.1-P	Field mustard	nucleus	29.2	23.47
Bra022568.1-P	Field mustard	cytosol	27.6	23.23
Bra004929.1-P	Field mustard	nucleus	29.6	22.84
Bra027886.1-P	Field mustard	nucleus, plastid	34.8	22.08
Bra018126.1-P	Field mustard	nucleus	36.8	19.74

Protein Annotations

MapMan:15.5.19	MapMan:27.1.5.3	EnsemblPlantsGene:Bra009667	EnsemblPlants:Bra009667.1	EnsemblPlants:Bra009667.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	UniProt:M4CZM0	PFAM:PF03634	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF7	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000253F02B	SEG:seg

Description

AT5G23280 (E=4e-046) | TCP family transcription factor, putative

Coordinates

chrA06:+:16455425..16456177

Molecular Weight (calculated)

26969.7 Da

IEP (calculated)

10.336

GRAVY (calculated)

-0.590

Length

250 amino acids

Sequence
(BLAST)

001: MSNNDGVMIS NGSLIEHQRQ QQQQQQQNLK QSSDGALVVK KPPAKDRHSK VDGRGRRIRM PIICAARVFQ LTRELGHKSD GQTIEWLLRQ AEPSIIAATG
101: TGTTPASFST ASVSVRGSST TISTSTNCTL SSSLDHKPFI LGKRLREDSG GGKDDMGSFA TPAGFWAVPA RPDFGQVWSF ASHQEMFLQQ QQQQQPAAAA
201: LFVNQQQQQQ AAMGEASAAR VGNYLPGHLN LLASLSGGAP GSGRREDDQR

Best Arabidopsis Sequence Match ( AT5G23280.1 )
(BLAST)

001: MSINNNNNNN NNNNDGLMIS SNGALIEQQP SVVVKKPPAK DRHSKVDGRG RRIRMPIICA ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP
101: ASFSTASVSI RGATNSTSLD HKPTSLLGGT SPFILGKRVR ADEDSNNSHN HSSVGKDETF TTTPAGFWAV PARPDFGQVW SFAGAPQEMF LQQQHHHQQP
201: LFVHQQQQQQ AAMGEASAAR VGNYLPGHLN LLASLSGGSP GSDRREEDPR

Arabidopsis Description

TCP7Transcription factor TCP7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMX2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.