Factsheet for Bra005984.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78335	Canola	nucleus	73.93	98.3
CDX81094	Canola	nucleus	74.79	97.22
Bra009338.1-P	Field mustard	nucleus	90.17	89.41
Bra028662.1-P	Field mustard	nucleus	80.34	82.1
Bra026506.1-P	Field mustard	cytosol, mitochondrion, nucleus	64.53	69.91
Bra029366.1-P	Field mustard	cytosol	52.14	69.32
Bra009667.1-P	Field mustard	nucleus	67.52	63.2
Os03t0422702-00	Rice	cytosol, plastid	32.05	59.52
Zm00001d018530_P001	Maize	plastid	50.43	57.0
Os02t0828566-01	Rice	nucleus	53.85	53.39
TraesCS6B01G462100.1	Wheat	mitochondrion	44.87	53.03
TraesCS6D01G397000.1	Wheat	mitochondrion	44.44	52.79
EES07800	Sorghum	plastid	54.27	52.26
TraesCS6A01G412800.1	Wheat	mitochondrion	44.02	52.02
HORVU6Hr1G093960.1	Barley	cytosol, peroxisome	54.27	47.57
Bra025528.1-P	Field mustard	nucleus	25.64	26.79
Bra016090.1-P	Field mustard	nucleus	40.6	26.69
Bra000395.1-P	Field mustard	nucleus	32.05	24.12
Bra003986.1-P	Field mustard	cytosol	25.21	24.08
Bra008001.1-P	Field mustard	nucleus, plastid	38.46	24.06
Bra007875.1-P	Field mustard	cytosol	25.21	23.98
Bra039096.1-P	Field mustard	nucleus	28.21	23.74
Bra022568.1-P	Field mustard	cytosol	29.91	23.57
Bra004407.1-P	Field mustard	nucleus, plastid	32.05	23.36
Bra004929.1-P	Field mustard	nucleus	32.05	23.15
Bra025244.1-P	Field mustard	nucleus	29.91	22.8
Bra027886.1-P	Field mustard	nucleus, plastid	35.04	20.81
Bra018126.1-P	Field mustard	nucleus	35.9	18.03

Protein Annotations

MapMan:15.5.19	MapMan:27.1.5.3	EnsemblPlantsGene:Bra005984	EnsemblPlants:Bra005984.1	EnsemblPlants:Bra005984.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	UniProt:M4CP46	PFAM:PF03634	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF73	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000253F749	SEG:seg

Description

AT5G08330 (E=2e-059) | TCP family transcription factor, putative

Coordinates

chrA03:+:1498581..1499285

Molecular Weight (calculated)

24264.7 Da

IEP (calculated)

10.871

GRAVY (calculated)

-0.311

Length

234 amino acids

Sequence
(BLAST)

001: MTSNDGSVPN GVIVEHLSAV NKGTLNAVKK PPAKDRHTKV DGRGRRIRMP IICAARVFQL TRELGHKSDG QTIEWLLRQA EPSIIAATGT GTTPASFSTA
101: SLSTSSSFTL GKRGVRAGEG EAGAGGGGLT VGPTMGASLM SGGGFWAVPA RPDFGQVWSF AAGAPPEMLF TQQQQAATLF VRQQQQQQAS AAAAMGEASA
201: ARVGNYLPGH HLNLLASLSG GNTGSGRREE DNPR

Best Arabidopsis Sequence Match ( AT5G08330.1 )
(BLAST)

001: MADNDGAVSN GIIVEQTSNK GPLNAVKKPP SKDRHSKVDG RGRRIRMPII CAARVFQLTR ELGHKSDGQT IEWLLRQAEP SIIAATGTGT TPASFSTASL
101: STSSPFTLGK RVVRAEEGES GGGGGGGLTV GHTMGTSLMG GGGSGGFWAV PARPDFGQVW SFATGAPPEM VFAQQQQPAT LFVRHQQQQQ ASAAAAAAMG
201: EASAARVGNY LPGHHLNLLA SLSGGANGSG RREDDHEPR

Arabidopsis Description

TCP21Transcription factor TCP21 [Source:UniProtKB/Swiss-Prot;Acc:Q9FTA2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.