Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78335 | Canola | nucleus | 92.78 | 94.89 |
| CDY40752 | Canola | cytosol | 81.67 | 83.05 |
| Bra005984.1-P | Field mustard | nucleus | 97.22 | 74.79 |
| CDY21536 | Canola | nucleus | 88.89 | 67.8 |
| CDY44770 | Canola | cytosol | 83.89 | 67.11 |
| CDX87179 | Canola | nucleus | 70.56 | 59.07 |
| CDY16842 | Canola | nucleus | 70.56 | 59.07 |
| Os03t0422702-00 | Rice | cytosol, plastid | 38.89 | 55.56 |
| CDY46951 | Canola | nucleus | 70.56 | 55.22 |
| CDY45760 | Canola | nucleus | 73.89 | 54.96 |
| CDY40799 | Canola | nucleus | 70.0 | 54.78 |
| CDX88010 | Canola | nucleus | 75.0 | 53.36 |
| Zm00001d018530_P001 | Maize | plastid | 55.56 | 48.31 |
| Os02t0828566-01 | Rice | nucleus | 60.56 | 46.19 |
| EES07800 | Sorghum | plastid | 61.67 | 45.68 |
| TraesCS6D01G397000.1 | Wheat | mitochondrion | 47.22 | 43.15 |
| TraesCS6B01G462100.1 | Wheat | mitochondrion | 47.22 | 42.93 |
| TraesCS6A01G412800.1 | Wheat | mitochondrion | 46.67 | 42.42 |
| HORVU6Hr1G093960.1 | Barley | cytosol, peroxisome | 60.56 | 40.82 |
| CDY36943 | Canola | nucleus | 37.22 | 35.45 |
| CDY24170 | Canola | nucleus | 37.22 | 27.57 |
| CDY60249 | Canola | cytosol | 30.0 | 25.96 |
| CDY48964 | Canola | nucleus | 30.0 | 24.55 |
| CDX72856 | Canola | nucleus | 42.78 | 23.05 |
| CDY20065 | Canola | cytosol | 34.44 | 23.05 |
| CDX96370 | Canola | nucleus | 42.78 | 22.99 |
| CDY27099 | Canola | nucleus | 35.56 | 22.94 |
| CDX95656 | Canola | nucleus | 37.22 | 22.87 |
| CDY00171 | Canola | nucleus | 34.44 | 22.46 |
| CDY53888 | Canola | nucleus | 38.33 | 22.19 |
| CDX91612 | Canola | nucleus | 35.0 | 21.88 |
| CDY28577 | Canola | cytosol | 28.89 | 21.4 |
| CDY28576 | Canola | nucleus | 37.78 | 21.38 |
| CDY52403 | Canola | nucleus | 36.11 | 21.31 |
| CDY03666 | Canola | nucleus, plastid | 41.67 | 21.13 |
| CDX82193 | Canola | nucleus, plastid | 41.11 | 21.02 |
| CDY68276 | Canola | nucleus, plastid | 37.22 | 20.87 |
| CDY01754 | Canola | nucleus, plastid | 37.22 | 20.74 |
| CDY13675 | Canola | nucleus | 35.56 | 20.58 |
| CDX74756 | Canola | nucleus | 36.11 | 20.0 |
| CDY18910 | Canola | nucleus | 35.56 | 19.69 |
| CDY71135 | Canola | nucleus | 42.22 | 19.39 |
| CDY39914 | Canola | nucleus, plastid | 41.67 | 19.04 |
Protein Annotations
| EnsemblPlants:CDX81094 | EnsemblPlantsGene:GSBRNA2T00134540001 | InterPro:IPR017887 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF73 | PFAM:PF03634 | PFscan:PS51369 | ProteinID:CDX81094 | ProteinID:CDX81094.1 | SEG:seg |
| UniParc:UPI0004EE2B63 | MapMan:15.5.19 | MapMan:27.1.5.3 | : | : | : |
Description
BnaC03g03480D
Coordinates
chrLK031823:+:1706503..1707531
Molecular Weight (calculated)
18822.2 Da
IEP (calculated)
11.072
GRAVY (calculated)
-0.504
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSNDGSGPN GVIAEHPSAV NKGTLNAVKK PPAKDRHTKV DGRGRRIRMP IICAARVFQL TRELGHKSDG QTIEWLLRQA EPSIIAATGT GTTPASFSTA
101: SLSTSSPFAL GKRGVRAGEG EAATLFVRQQ QQQQASAAAA MGEASAARVG NYLPGHHLNL LASLSGGNTG SGRREEDNPR
101: SLSTSSPFAL GKRGVRAGEG EAATLFVRQQ QQQQASAAAA MGEASAARVG NYLPGHHLNL LASLSGGNTG SGRREEDNPR
001: MADNDGAVSN GIIVEQTSNK GPLNAVKKPP SKDRHSKVDG RGRRIRMPII CAARVFQLTR ELGHKSDGQT IEWLLRQAEP SIIAATGTGT TPASFSTASL
101: STSSPFTLGK RVVRAEEGES GGGGGGGLTV GHTMGTSLMG GGGSGGFWAV PARPDFGQVW SFATGAPPEM VFAQQQQPAT LFVRHQQQQQ ASAAAAAAMG
201: EASAARVGNY LPGHHLNLLA SLSGGANGSG RREDDHEPR
101: STSSPFTLGK RVVRAEEGES GGGGGGGLTV GHTMGTSLMG GGGSGGFWAV PARPDFGQVW SFATGAPPEM VFAQQQQPAT LFVRHQQQQQ ASAAAAAAMG
201: EASAARVGNY LPGHHLNLLA SLSGGANGSG RREDDHEPR
Arabidopsis Description
TCP21Transcription factor TCP21 [Source:UniProtKB/Swiss-Prot;Acc:Q9FTA2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.