Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16842 | Canola | nucleus | 97.21 | 97.21 |
| Bra026506.1-P | Field mustard | cytosol, mitochondrion, nucleus | 95.81 | 95.37 |
| CDY40752 | Canola | cytosol | 61.86 | 75.14 |
| CDY45760 | Canola | nucleus | 82.33 | 73.14 |
| CDY46951 | Canola | nucleus | 78.14 | 73.04 |
| CDY40799 | Canola | nucleus | 77.67 | 72.61 |
| CDX88010 | Canola | nucleus | 83.72 | 71.15 |
| CDX78335 | Canola | nucleus | 58.14 | 71.02 |
| CDX81094 | Canola | nucleus | 59.07 | 70.56 |
| CDY44770 | Canola | cytosol | 72.56 | 69.33 |
| CDY21536 | Canola | nucleus | 72.09 | 65.68 |
| Zm00001d018530_P001 | Maize | plastid | 55.81 | 57.97 |
| Os03t0422702-00 | Rice | cytosol, plastid | 33.95 | 57.94 |
| Os02t0828566-01 | Rice | nucleus | 61.4 | 55.93 |
| EES07800 | Sorghum | plastid | 61.4 | 54.32 |
| TraesCS6D01G397000.1 | Wheat | mitochondrion | 49.77 | 54.31 |
| TraesCS6B01G462100.1 | Wheat | mitochondrion | 49.77 | 54.04 |
| TraesCS6A01G412800.1 | Wheat | mitochondrion | 49.3 | 53.54 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 59.07 | 52.05 |
| HORVU6Hr1G093960.1 | Barley | cytosol, peroxisome | 60.47 | 48.69 |
| CDY36943 | Canola | nucleus | 32.56 | 37.04 |
| CDX72856 | Canola | nucleus | 46.05 | 29.64 |
| CDX96370 | Canola | nucleus | 45.58 | 29.25 |
| CDY24170 | Canola | nucleus | 32.56 | 28.81 |
| CDY60249 | Canola | cytosol | 27.44 | 28.37 |
| CDY03666 | Canola | nucleus, plastid | 44.19 | 26.76 |
| CDX82193 | Canola | nucleus, plastid | 43.72 | 26.7 |
| CDY48964 | Canola | nucleus | 26.98 | 26.36 |
| CDX95656 | Canola | nucleus | 35.81 | 26.28 |
| CDY28577 | Canola | cytosol | 29.3 | 25.93 |
| CDY27099 | Canola | nucleus | 33.02 | 25.45 |
| CDY28576 | Canola | nucleus | 37.21 | 25.16 |
| CDY20065 | Canola | cytosol | 31.16 | 24.91 |
| CDY53888 | Canola | nucleus | 35.81 | 24.76 |
| CDY00171 | Canola | nucleus | 31.63 | 24.64 |
| CDX91612 | Canola | nucleus | 32.56 | 24.31 |
| CDY68276 | Canola | nucleus, plastid | 36.28 | 24.3 |
| CDY01754 | Canola | nucleus, plastid | 36.28 | 24.15 |
| CDX74756 | Canola | nucleus | 36.28 | 24.0 |
| CDY52403 | Canola | nucleus | 33.95 | 23.93 |
| CDY18910 | Canola | nucleus | 35.81 | 23.69 |
| CDY13675 | Canola | nucleus | 33.49 | 23.15 |
| CDY71135 | Canola | nucleus | 40.0 | 21.94 |
| CDY39914 | Canola | nucleus, plastid | 40.0 | 21.83 |
Protein Annotations
| MapMan:15.5.19 | MapMan:27.1.5.3 | EnsemblPlants:CDX87179 | ProteinID:CDX87179 | ProteinID:CDX87179.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00146105001 | InterPro:IPR017887 | PFAM:PF03634 | PFscan:PS51369 |
| PANTHER:PTHR31072 | PANTHER:PTHR31072:SF7 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI0004EF234F | SEG:seg |
Description
BnaC09g04940D
Coordinates
chrLK031849:-:962131..962778
Molecular Weight (calculated)
22983.9 Da
IEP (calculated)
9.867
GRAVY (calculated)
-0.492
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNNNDGALV VKKPPAKDRH SKVDGRGRRI RMPIICAARV FQLTRELGHK SDGQTIEWLL RQAEPSIIAA TGTGTTPASF STVSASLRGN STTTSCNSSS
101: SLDHKPLLGS SPFILGKRVR ADEDTSSGFW AVPARPEFGQ VWSFAAGATQ EMFLQQQQQQ AAGLFVHHQQ QQQQAAMGEA SAARVGNYLP GHLNLLASLS
201: SGAPGSGRGE DDDQR
101: SLDHKPLLGS SPFILGKRVR ADEDTSSGFW AVPARPEFGQ VWSFAAGATQ EMFLQQQQQQ AAGLFVHHQQ QQQQAAMGEA SAARVGNYLP GHLNLLASLS
201: SGAPGSGRGE DDDQR
001: MSINNNNNNN NNNNDGLMIS SNGALIEQQP SVVVKKPPAK DRHSKVDGRG RRIRMPIICA ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP
101: ASFSTASVSI RGATNSTSLD HKPTSLLGGT SPFILGKRVR ADEDSNNSHN HSSVGKDETF TTTPAGFWAV PARPDFGQVW SFAGAPQEMF LQQQHHHQQP
201: LFVHQQQQQQ AAMGEASAAR VGNYLPGHLN LLASLSGGSP GSDRREEDPR
101: ASFSTASVSI RGATNSTSLD HKPTSLLGGT SPFILGKRVR ADEDSNNSHN HSSVGKDETF TTTPAGFWAV PARPDFGQVW SFAGAPQEMF LQQQHHHQQP
201: LFVHQQQQQQ AAMGEASAAR VGNYLPGHLN LLASLSGGSP GSDRREEDPR
Arabidopsis Description
TCP7Transcription factor TCP7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMX2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.