Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48964 | Canola | nucleus | 91.35 | 86.36 |
| AT5G41030.1 | Thale cress | nucleus | 55.29 | 47.33 |
| TraesCS2D01G049400.1 | Wheat | cytosol | 15.87 | 37.5 |
| KRH30615 | Soybean | cytosol | 25.48 | 33.97 |
| CDY40752 | Canola | cytosol | 26.92 | 31.64 |
| CDY36943 | Canola | nucleus | 27.88 | 30.69 |
| CDX78335 | Canola | nucleus | 25.96 | 30.68 |
| TraesCS2B01G062900.1 | Wheat | plastid | 23.56 | 30.62 |
| CDX81094 | Canola | nucleus | 25.96 | 30.0 |
| Zm00001d025033_P001 | Maize | plastid | 24.04 | 28.41 |
| EES10469 | Sorghum | plastid | 23.56 | 27.68 |
| CDY20065 | Canola | cytosol | 35.58 | 27.51 |
| CDX87179 | Canola | nucleus | 28.37 | 27.44 |
| CDY16842 | Canola | nucleus | 28.37 | 27.44 |
| Os04t0194600-01 | Rice | plastid | 23.08 | 27.27 |
| CDY44770 | Canola | cytosol | 29.33 | 27.11 |
| CDY13675 | Canola | nucleus | 38.46 | 25.72 |
| CDY21536 | Canola | nucleus | 28.85 | 25.42 |
| CDY00171 | Canola | nucleus | 33.65 | 25.36 |
| CDY52403 | Canola | nucleus | 37.02 | 25.25 |
| CDY46951 | Canola | nucleus | 27.4 | 24.78 |
| CDY24170 | Canola | nucleus | 28.85 | 24.69 |
| CDY45760 | Canola | nucleus | 28.37 | 24.38 |
| CDY40799 | Canola | nucleus | 26.92 | 24.35 |
| CDX88010 | Canola | nucleus | 28.85 | 23.72 |
| CDY68276 | Canola | nucleus, plastid | 35.58 | 23.05 |
| CDY28576 | Canola | nucleus | 35.1 | 22.96 |
| CDY01754 | Canola | nucleus, plastid | 35.58 | 22.91 |
| CDY27099 | Canola | nucleus | 29.33 | 21.86 |
| CDX95656 | Canola | nucleus | 30.77 | 21.84 |
| CDY28577 | Canola | cytosol | 25.48 | 21.81 |
| CDY53888 | Canola | nucleus | 31.73 | 21.22 |
| CDX91612 | Canola | nucleus | 29.33 | 21.18 |
| CDX74756 | Canola | nucleus | 31.25 | 20.0 |
| CDY18910 | Canola | nucleus | 30.77 | 19.69 |
| CDX96370 | Canola | nucleus | 27.4 | 17.01 |
| CDY71135 | Canola | nucleus | 31.73 | 16.84 |
| CDX72856 | Canola | nucleus | 26.92 | 16.77 |
| CDY39914 | Canola | nucleus, plastid | 31.25 | 16.5 |
| CDX82193 | Canola | nucleus, plastid | 27.88 | 16.48 |
| CDY03666 | Canola | nucleus, plastid | 27.88 | 16.34 |
Protein Annotations
| MapMan:15.5.19 | UniProt:A0A078J987 | EnsemblPlants:CDY60249 | ProteinID:CDY60249 | ProteinID:CDY60249.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00028380001 | InterPro:IPR017887 | PFAM:PF03634 | PFscan:PS51369 |
| PANTHER:PTHR31072 | PANTHER:PTHR31072:SF69 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI0004EE4257 | SEG:seg |
Description
BnaC01g43000DBnaC01g43000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J987]
Coordinates
chrLK033859:-:9217..9843
Molecular Weight (calculated)
22743.8 Da
IEP (calculated)
8.286
GRAVY (calculated)
-0.786
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPKNPPNLL NPEAEVKVLN NTVEGKSKWK QKEKGKQGRE IQTKSSKDGH LKVEGRGRRV RLPPLCAARI FQLTRELGHK SDGETLQWLL RHAEPSIISA
101: TGTGIKPAAD SVSRSQVSNG FWANETGFGI VGANPTGGGL DLNCGIGFLG FDFNGSSDMG FENNQMPQDG VLNPLIYQQI GQEQAKVLQH HHHHPHEAQQ
201: ENADKQGS
101: TGTGIKPAAD SVSRSQVSNG FWANETGFGI VGANPTGGGL DLNCGIGFLG FDFNGSSDMG FENNQMPQDG VLNPLIYQQI GQEQAKVLQH HHHHPHEAQQ
201: ENADKQGS
001: MVMEPKKNQN LPSFLNPSRQ NQDNDKKRKQ TEVKGFDIVV GEKRKKKENE EEDQEIQILY EKEKKKPNKD RHLKVEGRGR RVRLPPLCAA RIYQLTKELG
101: HKSDGETLEW LLQHAEPSIL SATVNGIKPT ESVVSQPPLT ADLMICHSVE EASRTQMEAN GLWRNETGQT IGGFDLNYGI GFDFNGVPEI GFGDNQTPGL
201: ELRLSQVGVL NPQVFQQMGK EQFRVLHHHS HEDQQQSAEE NGS
101: HKSDGETLEW LLQHAEPSIL SATVNGIKPT ESVVSQPPLT ADLMICHSVE EASRTQMEAN GLWRNETGQT IGGFDLNYGI GFDFNGVPEI GFGDNQTPGL
201: ELRLSQVGVL NPQVFQQMGK EQFRVLHHHS HEDQQQSAEE NGS
Arabidopsis Description
TCP6Transcription factor TCP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLM6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.