Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009667.1-P | Field mustard | nucleus | 96.84 | 98.0 |
| CDY45760 | Canola | nucleus | 93.28 | 97.52 |
| CDX87179 | Canola | nucleus | 71.15 | 83.72 |
| CDY16842 | Canola | nucleus | 71.15 | 83.72 |
| CDY40752 | Canola | cytosol | 56.92 | 81.36 |
| CDX78335 | Canola | nucleus | 54.15 | 77.84 |
| AT5G23280.1 | Thale cress | nucleus | 76.28 | 77.2 |
| CDY46951 | Canola | nucleus | 69.57 | 76.52 |
| CDY40799 | Canola | nucleus | 69.57 | 76.52 |
| CDX81094 | Canola | nucleus | 53.36 | 75.0 |
| CDY44770 | Canola | cytosol | 64.43 | 72.44 |
| CDY21536 | Canola | nucleus | 62.85 | 67.37 |
| VIT_10s0042g00170.t01 | Wine grape | nucleus | 66.4 | 65.88 |
| Os03t0422702-00 | Rice | cytosol, plastid | 29.64 | 59.52 |
| Zm00001d018530_P001 | Maize | plastid | 47.43 | 57.97 |
| Os02t0828566-01 | Rice | nucleus | 52.96 | 56.78 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 53.36 | 55.33 |
| TraesCS6B01G462100.1 | Wheat | mitochondrion | 42.29 | 54.04 |
| TraesCS6A01G412800.1 | Wheat | mitochondrion | 42.29 | 54.04 |
| TraesCS6D01G397000.1 | Wheat | mitochondrion | 41.9 | 53.81 |
| EES07800 | Sorghum | plastid | 51.38 | 53.5 |
| HORVU6Hr1G093960.1 | Barley | cytosol, peroxisome | 51.78 | 49.06 |
| CDY36943 | Canola | nucleus | 27.27 | 36.51 |
| CDY24170 | Canola | nucleus | 28.46 | 29.63 |
| CDX72856 | Canola | nucleus | 38.74 | 29.34 |
| CDX96370 | Canola | nucleus | 38.34 | 28.96 |
| CDY60249 | Canola | cytosol | 23.72 | 28.85 |
| CDY48964 | Canola | nucleus | 23.32 | 26.82 |
| CDY28577 | Canola | cytosol | 25.3 | 26.34 |
| CDY03666 | Canola | nucleus, plastid | 36.76 | 26.2 |
| CDX82193 | Canola | nucleus, plastid | 36.36 | 26.14 |
| CDY28576 | Canola | nucleus | 31.62 | 25.16 |
| CDX95656 | Canola | nucleus | 28.85 | 24.91 |
| CDY20065 | Canola | cytosol | 26.48 | 24.91 |
| CDY00171 | Canola | nucleus | 26.88 | 24.64 |
| CDY68276 | Canola | nucleus, plastid | 31.23 | 24.61 |
| CDY01754 | Canola | nucleus, plastid | 31.23 | 24.46 |
| CDY27099 | Canola | nucleus | 26.88 | 24.37 |
| CDY52403 | Canola | nucleus | 28.85 | 23.93 |
| CDY53888 | Canola | nucleus | 29.25 | 23.79 |
| CDY13675 | Canola | nucleus | 28.85 | 23.47 |
| CDX91612 | Canola | nucleus | 26.48 | 23.26 |
| CDX74756 | Canola | nucleus | 29.64 | 23.08 |
| CDY18910 | Canola | nucleus | 29.25 | 22.77 |
| CDY71135 | Canola | nucleus | 34.78 | 22.45 |
| CDY39914 | Canola | nucleus, plastid | 34.39 | 22.08 |
Protein Annotations
| EnsemblPlants:CDX88010 | EnsemblPlantsGene:GSBRNA2T00147414001 | InterPro:IPR017887 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF7 | PFAM:PF03634 | PFscan:PS51369 | ProteinID:CDX88010 | ProteinID:CDX88010.1 | SEG:seg |
| UniParc:UPI0004EE8547 | MapMan:15.5.19 | MapMan:27.1.5.3 | : | : | : |
Description
BnaA06g26010D
Coordinates
chrLK031854:+:106218..107393
Molecular Weight (calculated)
27336.0 Da
IEP (calculated)
10.104
GRAVY (calculated)
-0.632
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNNNNDDGV MISNGSLIEH QRQQQQQQNL KQSSDGGLVV KKPPAKDRHS KVDGRGRRIR MPIICAARVF QLTRELGHKS DGQTIEWLLR QAEPSIIAAT
101: GTGTTPASFS TASVSVRGSS TTISTSTNCT LSSSLDHKPF ILGKRLREDS GGGKDEMGSF ATPAGFWAVP ARPDFGQVWS FASHQEMFLQ QQQQQQQQPA
201: AAALFVHQQQ QQQAAMGEAS AARVGNYLPG HLNLLASLSG GAPGSGRRED DQR
101: GTGTTPASFS TASVSVRGSS TTISTSTNCT LSSSLDHKPF ILGKRLREDS GGGKDEMGSF ATPAGFWAVP ARPDFGQVWS FASHQEMFLQ QQQQQQQQPA
201: AAALFVHQQQ QQQAAMGEAS AARVGNYLPG HLNLLASLSG GAPGSGRRED DQR
001: MSINNNNNNN NNNNDGLMIS SNGALIEQQP SVVVKKPPAK DRHSKVDGRG RRIRMPIICA ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP
101: ASFSTASVSI RGATNSTSLD HKPTSLLGGT SPFILGKRVR ADEDSNNSHN HSSVGKDETF TTTPAGFWAV PARPDFGQVW SFAGAPQEMF LQQQHHHQQP
201: LFVHQQQQQQ AAMGEASAAR VGNYLPGHLN LLASLSGGSP GSDRREEDPR
101: ASFSTASVSI RGATNSTSLD HKPTSLLGGT SPFILGKRVR ADEDSNNSHN HSSVGKDETF TTTPAGFWAV PARPDFGQVW SFAGAPQEMF LQQQHHHQQP
201: LFVHQQQQQQ AAMGEASAAR VGNYLPGHLN LLASLSGGSP GSDRREEDPR
Arabidopsis Description
TCP7Transcription factor TCP7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMX2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.