CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025033_P001	Maize	plastid	82.49	82.95
TraesCS2D01G049400.1	Wheat	cytosol	37.85	76.14
Os04t0194600-01	Rice	plastid	64.97	65.34
TraesCS2B01G062900.1	Wheat	plastid	58.76	65.0
KRH32533	Soybean	plastid	39.55	36.84
KRH19921	Soybean	plastid	38.42	36.76
VIT_08s0040g01600.t01	Wine grape	nucleus, plastid	40.11	34.8
KRH30615	Soybean	cytosol	25.99	29.49
AT2G37000.1	Thale cress	nucleus, plastid	29.38	27.66
EES11145	Sorghum	plastid	32.2	27.54
PGSC0003DMT400055541	Potato	plastid	31.07	27.36
Solyc09g008030.1.1	Tomato	plastid	30.51	26.87
EES05476	Sorghum	plastid	32.2	25.68
EES07800	Sorghum	plastid	33.33	24.28
CDY60249	Canola	cytosol	27.68	23.56
AT3G45150.1	Thale cress	nucleus	20.9	22.42
CDY48964	Canola	nucleus	26.55	21.36
Bra025528.1-P	Field mustard	nucleus	26.55	20.98
AT5G41030.1	Thale cress	nucleus	24.86	18.11
PGSC0003DMT400095626	Potato	plastid	27.68	17.5
EES01992	Sorghum	nucleus	29.94	16.31
EER99208	Sorghum	nucleus	29.94	16.26
OQU80770	Sorghum	nucleus	29.94	14.76
EER88112	Sorghum	nucleus	30.51	13.71
EES07255	Sorghum	nucleus	30.51	13.57

Protein Annotations

MapMan:15.5.19	EntrezGene:8067752	UniProt:C5YCQ5	EnsemblPlants:EES10469	ProteinID:EES10469	ProteinID:EES10469.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	ProteinID:OQU81195.1	PFAM:PF03634
PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF25	EnsemblPlantsGene:SORBI_3006G025000	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP
UniParc:UPI0001A86AD0	RefSeq:XP_002446141.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:4307639..4314232

Molecular Weight (calculated)

18198.4 Da

IEP (calculated)

8.914

GRAVY (calculated)

-0.120

Length

177 amino acids

Sequence
(BLAST)

001: MSSSSELYNL VPAPQTLNPP APAAADLSSS TAVAAAAAAA PGDGALRGRV RRPVGSSSVD RHAKVAGRGR RVRIPAMVAA RVFQLTRELG HRSDGETIEW
101: LLRQAEPSII AATGTGVTTE EAPSVLVPVS SVAATASMTP VSYSYYTALL MQPPTAKESP PASAYVSGTA AEENNNN

Best Arabidopsis Sequence Match ( AT1G69690.1 )
(BLAST)

001: MDPDPDHNHR PNFPLQLLDS STSSSSTSLA IISTTSEPNS EPKKPPPKRT STKDRHTKVE GRGRRIRMPA MCAARVFQLT RELGHKSDGE TIEWLLQQAE
101: PAVIAATGTG TIPANFTSLN ISLRSSRSSL SAAHLRTTPS SYYFHSPHQS MTHHLQHQHQ VRPKNESHSS SSSSSQLLDH NQMGNYLVQS TAGSLPTSQS
201: PATAPFWSSG DNTQNLWAFN INPHHSGVVA GDVYNPNSGG SGGGSGVHLM NFAAPIALFS GQPLASGYGG GGGGGGEHSH YGVLAALNAA YRPVAETGNH
301: NNNQQNRDGD HHHNHQEDGS TSHHS

Arabidopsis Description

TCP15TCP15 [Source:UniProtKB/TrEMBL;Acc:A0A178WLV7]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.