Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G516300.1 | Wheat | nucleus | 95.42 | 96.8 |
| TraesCS4A01G355900.1 | Wheat | nucleus | 81.95 | 96.62 |
| HORVU5Hr1G117990.1 | Barley | cytosol, mitochondrion, nucleus | 95.13 | 88.53 |
| Zm00001d031725_P001 | Maize | nucleus | 71.63 | 71.43 |
| OQU80770 | Sorghum | nucleus | 73.07 | 71.03 |
| Os08t0544800-01 | Rice | nucleus | 71.92 | 67.29 |
| GSMUA_Achr3P12320_001 | Banana | cytosol | 22.64 | 39.11 |
| CDY27099 | Canola | nucleus | 26.93 | 33.69 |
| AT5G51910.1 | Thale cress | nucleus | 28.08 | 33.45 |
| VIT_16s0022g02480.t01 | Wine grape | nucleus | 16.05 | 33.14 |
| VIT_15s0048g01150.t01 | Wine grape | nucleus | 31.52 | 32.45 |
| CDX91612 | Canola | nucleus | 26.65 | 32.29 |
| TraesCS6B01G262600.1 | Wheat | plastid | 18.34 | 32.16 |
| CDX95656 | Canola | nucleus | 26.93 | 32.08 |
| Bra022568.1-P | Field mustard | cytosol | 26.93 | 31.65 |
| CDY53888 | Canola | nucleus | 27.51 | 30.87 |
| Bra000395.1-P | Field mustard | nucleus | 27.51 | 30.87 |
| KRH35393 | Soybean | nucleus | 27.51 | 30.87 |
| KRH48289 | Soybean | nucleus | 29.51 | 30.75 |
| TraesCS2B01G062900.1 | Wheat | plastid | 14.04 | 30.62 |
| Bra004929.1-P | Field mustard | nucleus | 28.37 | 30.56 |
| CDX74756 | Canola | nucleus | 28.37 | 30.46 |
| CDY18910 | Canola | nucleus | 28.08 | 30.15 |
| KRG91429 | Soybean | nucleus | 28.08 | 30.06 |
| KRH65181 | Soybean | nucleus | 28.94 | 30.06 |
| PGSC0003DMT400094424 | Potato | cytosol | 20.92 | 29.8 |
| KRH57263 | Soybean | nucleus | 29.23 | 29.48 |
| KRH03994 | Soybean | nucleus | 28.65 | 29.41 |
| TraesCS5B01G310000.1 | Wheat | cytosol, nucleus, peroxisome | 28.08 | 28.91 |
| Solyc03g006800.1.1 | Tomato | nucleus | 26.36 | 28.22 |
| AT2G45680.1 | Thale cress | cytosol | 28.37 | 27.81 |
| PGSC0003DMT400088049 | Potato | cytosol | 21.2 | 27.41 |
| TraesCS6B01G462100.1 | Wheat | mitochondrion | 14.9 | 26.26 |
| PGSC0003DMT400062327 | Potato | nucleus | 27.51 | 26.23 |
| VIT_02s0025g04590.t01 | Wine grape | nucleus | 30.09 | 25.55 |
| TraesCS2B01G392900.1 | Wheat | cytosol | 18.34 | 25.5 |
| Solyc08g080150.1.1 | Tomato | nucleus | 26.65 | 25.14 |
| PGSC0003DMT400058534 | Potato | nucleus | 26.07 | 24.33 |
| TraesCS4B01G093700.1 | Wheat | nucleus, plastid | 25.79 | 23.62 |
| TraesCS3B01G470700.1 | Wheat | nucleus | 21.49 | 21.49 |
| TraesCS7B01G091900.1 | Wheat | cytosol, nucleus, peroxisome | 22.64 | 21.24 |
| TraesCS6B01G334900.1 | Wheat | nucleus | 24.36 | 21.14 |
| TraesCS5B01G117100.1 | Wheat | nucleus | 24.64 | 20.62 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G516200.1 | EnsemblPlantsGene:TraesCS5B01G516200 | InterPro:IPR017887 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF19 | PFAM:PF03634 | PFscan:PS51369 | SEG:seg | MapMan:15.5.19 | : |
Description
No Description!
Coordinates
chr5B:+:680580331..680581380
Molecular Weight (calculated)
36140.2 Da
IEP (calculated)
5.530
GRAVY (calculated)
-0.395
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MESEGQDMPP GEGEAQGHAG GVAEPGAMAM VPVPVRGGYM VVPKPEPVEL FGGAGAGGGM VVRKPPPRNR DRHTKVEGRG RRIRMPAACA ARIFQLTREL
101: GHKSDGETVR WLLQQSEPAI VAATGTGTVP AIATTVDGVL RIPTQSSSSA SSAVVDDEAS AKRRRKLQPT RAAGPLATVP PAAAYYSVLA DPLLQGGAGG
201: AAISVASGLA PIGGQQGLVP VFAVPSAAGA GGGNHMIPQA TAVWMVPQPA GAPNQPTQYW AFQSAPQLIN LAGAQTMPAG AVFPNVAADY HQQQQSASTV
301: VQNTNSDHQQ FSHHLTGAES HEQQRRDHHP EEDDADDDDE PVSDSSPED
101: GHKSDGETVR WLLQQSEPAI VAATGTGTVP AIATTVDGVL RIPTQSSSSA SSAVVDDEAS AKRRRKLQPT RAAGPLATVP PAAAYYSVLA DPLLQGGAGG
201: AAISVASGLA PIGGQQGLVP VFAVPSAAGA GGGNHMIPQA TAVWMVPQPA GAPNQPTQYW AFQSAPQLIN LAGAQTMPAG AVFPNVAADY HQQQQSASTV
301: VQNTNSDHQQ FSHHLTGAES HEQQRRDHHP EEDDADDDDE PVSDSSPED
001: MATIQKLEEV AGKDQTLRAV DLTIINGVRN VETSRPFQVN PTVSLEPKAE PVMPSFSMSL APPSSTGPPL KRASTKDRHT KVEGRGRRIR MPATCAARIF
101: QLTRELGHKS DGETIRWLLE NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD AVSASSGLAP IATTTTIQPP
201: QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
301: ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH
101: QLTRELGHKS DGETIRWLLE NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD AVSASSGLAP IATTTTIQPP
201: QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
301: ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH
Arabidopsis Description
TCP9Transcription factor TCP9 [Source:UniProtKB/Swiss-Prot;Acc:O64647]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.