Factsheet for TraesCS2A01G081300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G215300.1
TraesCS1B01G228800.1
TraesCS1D01G217800.1
TraesCS6A01G262200.1
TraesCS6A01G412800.1
TraesCS6B01G289500.1
TraesCS6B01G462100.1
TraesCS6D01G243000.1
TraesCS6D01G397000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G47640.1	TraesCS1A01G215300.1	AT4G17680.1	21798944
AT3G47640.1	TraesCS1B01G228800.1	AT4G17680.1	21798944
AT3G47640.1	TraesCS1D01G217800.1	AT4G17680.1	21798944
AT3G47640.1	TraesCS6A01G262200.1	AT4G17680.1	21798944
AT3G47640.1	TraesCS6B01G289500.1	AT4G17680.1	21798944
AT3G47640.1	TraesCS6D01G243000.1	AT4G17680.1	21798944
AT3G47640.1	TraesCS6A01G412800.1	AT5G08330.1	21798944
AT3G47640.1	TraesCS6B01G462100.1	AT5G08330.1	21798944
AT3G47640.1	TraesCS6D01G397000.1	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G095900.1	Wheat	nucleus	72.19	90.37
TraesCS2D01G079100.1	Wheat	plastid	72.49	74.47
KXG39270	Sorghum	nucleus	50.89	63.47
Zm00001d029339_P001	Maize	nucleus	50.59	63.33
Os03t0379300-01	Rice	nucleus	46.75	62.7
HORVU2Hr1G013450.3	Barley	cytosol, mitochondrion, nucleus, plastid	71.01	61.07
TraesCS2A01G157800.1	Wheat	nucleus	35.5	47.24
GSMUA_AchrUn_...	Banana	nucleus	26.63	42.45
CDY17794	Canola	cytosol	9.17	39.24
CDX86900	Canola	cytosol	7.1	35.82
KRH56921	Soybean	nucleus	23.37	35.59
KRH03461	Soybean	nucleus	23.37	35.11
Solyc03g116340.2.1	Tomato	nucleus	21.3	29.88
PGSC0003DMT400001617	Potato	nucleus	20.71	29.05
AT3G47640.1	Thale cress	nucleus	20.41	28.75
CDY21793	Canola	nucleus	19.53	28.33
CDX77869	Canola	nucleus	19.53	28.33
Bra019509.1-P	Field mustard	nucleus	19.53	28.21
CDX83022	Canola	nucleus	19.82	28.03
TraesCS4A01G163300.1	Wheat	mitochondrion	18.64	27.51
VIT_17s0000g06000.t01	Wine grape	nucleus	20.41	26.95
CDY53423	Canola	nucleus	18.64	26.47
VIT_14s0108g00480.t01	Wine grape	plastid	25.15	25.91
GSMUA_Achr2P07390_001	Banana	nucleus	15.09	22.37
Bra033788.1-P	Field mustard	nucleus	14.2	10.93

Protein Annotations

EnsemblPlants:TraesCS2A01G081300.1	EnsemblPlantsGene:TraesCS2A01G081300	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR23042	PANTHER:PTHR23042:SF62	PFscan:PS50888	SEG:seg	SUPFAM:SSF47459	MapMan:15.5.32
MapMan:25.4.1.4	:	:	:	:	:

Description

No Description!

Coordinates

chr2A:+:36800440..36802444

Molecular Weight (calculated)

36659.1 Da

IEP (calculated)

6.585

GRAVY (calculated)

-0.601

Length

338 amino acids

Sequence
(BLAST)

001: MAHASSPRHR PRNGTGTPRA PPPLFFFFFF STLRHCANQG QRSQAAATPF LQSPSIRDVC GAGQGMVAML PAARGDAAPA ASAGAADKLV HGPVTDGKCK
101: KKAPRMIHKA EREKHKRDLL NDLFSELDEM LEADRQTNGK ACILTDTTRI LRDLLSQLES LRKENSTLQN ESHYVTMERN ELQDENGVLR NEILELQNEL
201: ATLPAGNPGW GHATAGSPHP AGTVFPSQQP MQPTTIASAV FPLQQPLQQT TILEHPYAPP PPPRELKLFP DAASDIEGLE PSEDQEAANH IARPLARYPT
301: QSALWPVSLG LPRMEDEQCS SGTTGSSKEG SSSASSRD

Best Arabidopsis Sequence Match ( AT3G47640.1 )
(BLAST)

001: MVSKTPSTSS DEANATADER CRKGKVPKRI NKAVRERLKR EHLNELFIEL ADTLELNQQN SGKASILCEA TRFLKDVFGQ IESLRKEHAS LLSESSYVTT
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE

Arabidopsis Description

BHLH47Transcription factor bHLH47 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.