Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86900 | Canola | cytosol | 56.96 | 67.16 |
| CDY21793 | Canola | nucleus | 75.95 | 25.75 |
| CDX77869 | Canola | nucleus | 74.68 | 25.32 |
| AT3G47640.1 | Thale cress | nucleus | 72.15 | 23.75 |
| CDY53423 | Canola | nucleus | 69.62 | 23.11 |
| CDX83022 | Canola | nucleus | 67.09 | 22.18 |
| KRH03461 | Soybean | nucleus | 48.1 | 16.89 |
| PGSC0003DMT400001617 | Potato | nucleus | 48.1 | 15.77 |
| Solyc03g116340.2.1 | Tomato | nucleus | 48.1 | 15.77 |
| KRH56921 | Soybean | nucleus | 44.3 | 15.77 |
| VIT_17s0000g06000.t01 | Wine grape | nucleus | 45.57 | 14.06 |
| GSMUA_AchrUn_... | Banana | nucleus | 34.18 | 12.74 |
| Os03t0379300-01 | Rice | nucleus | 39.24 | 12.3 |
| KXG39270 | Sorghum | nucleus | 40.51 | 11.81 |
| TraesCS2B01G095900.1 | Wheat | nucleus | 39.24 | 11.48 |
| Zm00001d029339_P001 | Maize | nucleus | 39.24 | 11.48 |
| HORVU2Hr1G028530.3 | Barley | cytosol, mitochondrion, nucleus | 39.24 | 11.44 |
| TraesCS2A01G157800.1 | Wheat | nucleus | 36.71 | 11.42 |
| Zm00001d048901_P002 | Maize | nucleus | 39.24 | 11.31 |
| TraesCS2D01G163900.2 | Wheat | nucleus | 36.71 | 11.2 |
| Os07t0628500-01 | Rice | nucleus | 36.71 | 10.94 |
| TraesCS2B01G183300.1 | Wheat | nucleus | 35.44 | 10.77 |
| GSMUA_Achr3P20020_001 | Banana | nucleus | 43.04 | 10.62 |
| TraesCS4B01G125400.1 | Wheat | nucleus | 36.71 | 10.62 |
| Zm00001d022225_P001 | Maize | nucleus | 35.44 | 10.53 |
| GSMUA_Achr2P07390_001 | Banana | nucleus | 30.38 | 10.53 |
| Os08t0494375-00 | Rice | nucleus | 22.78 | 10.47 |
| Os11t0601700-01 | Rice | nucleus | 36.71 | 10.43 |
| EER99751 | Sorghum | nucleus | 34.18 | 10.15 |
| KXG28874 | Sorghum | nucleus | 35.44 | 10.11 |
| TraesCS2D01G079100.1 | Wheat | plastid | 39.24 | 9.42 |
| TraesCS2A01G081300.1 | Wheat | plastid | 39.24 | 9.17 |
| TraesCS4A01G163300.1 | Wheat | mitochondrion | 22.78 | 7.86 |
| HORVU2Hr1G013450.3 | Barley | cytosol, mitochondrion, nucleus, plastid | 37.97 | 7.63 |
Protein Annotations
| EnsemblPlants:CDY17794 | EnsemblPlantsGene:GSBRNA2T00002063001 | PANTHER:PTHR23042 | PANTHER:PTHR23042:SF51 | ProteinID:CDY17794 | ProteinID:CDY17794.1 |
| UniParc:UPI0004EF2FC6 | UniProt:A0A078FXA3 | MapMan:35.1 | : | : | : |
Description
BnaC08g22020DBnaC08g22020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FXA3]
Coordinates
chrLK032077:-:720318..722179
Molecular Weight (calculated)
9061.8 Da
IEP (calculated)
8.781
GRAVY (calculated)
-0.741
Length
79 amino acids
Sequence
(BLAST)
(BLAST)
1: MPRKGKVPKR INKAVRERII CEHLNELFIE LADSLELNQQ NSGRSLINGH TCLLSDSNYV TTEKNELQGR NISARDRDI
001: MVSKTPSTSS DEANATADER CRKGKVPKRI NKAVRERLKR EHLNELFIEL ADTLELNQQN SGKASILCEA TRFLKDVFGQ IESLRKEHAS LLSESSYVTT
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE
Arabidopsis Description
BHLH47Transcription factor bHLH47 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.