Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0687500-01 | |
| Os02t0828566-01 | |
| Os03t0422702-00 | |
| Os10t0565500-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G47640.1 | Os02t0687500-01 | AT4G17680.1 | 21798944 |
| AT3G47640.1 | Os10t0565500-01 | AT4G17680.1 | 21798944 |
| AT3G47640.1 | Os02t0828566-01 | AT5G08330.1 | 21798944 |
| AT3G47640.1 | Os03t0422702-00 | AT5G08330.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os08t0494375-00 | Rice | nucleus | 48.3 | 74.42 |
| TraesCS2A01G157800.1 | Wheat | nucleus | 60.0 | 62.6 |
| TraesCS2D01G163900.2 | Wheat | nucleus | 59.25 | 60.62 |
| Zm00001d022225_P001 | Maize | nucleus | 58.11 | 57.89 |
| TraesCS2B01G183300.1 | Wheat | nucleus | 56.6 | 57.69 |
| EER99751 | Sorghum | nucleus | 57.74 | 57.52 |
| HORVU2Hr1G028530.3 | Barley | cytosol, mitochondrion, nucleus | 56.98 | 55.72 |
| Os03t0379300-01 | Rice | nucleus | 46.42 | 48.81 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.21 | 41.51 |
| CDX86900 | Canola | cytosol | 9.43 | 37.31 |
| CDY17794 | Canola | cytosol | 10.94 | 36.71 |
| Os11t0601700-01 | Rice | nucleus | 35.85 | 34.17 |
| KRH03461 | Soybean | nucleus | 28.3 | 33.33 |
| KRH56921 | Soybean | nucleus | 27.92 | 33.33 |
| Solyc03g116340.2.1 | Tomato | nucleus | 28.3 | 31.12 |
| PGSC0003DMT400001617 | Potato | nucleus | 27.92 | 30.71 |
| VIT_17s0000g06000.t01 | Wine grape | nucleus | 28.68 | 29.69 |
| CDY21793 | Canola | nucleus | 26.04 | 29.61 |
| Bra019509.1-P | Field mustard | nucleus | 26.04 | 29.49 |
| AT3G47640.1 | Thale cress | nucleus | 26.42 | 29.17 |
| CDX77869 | Canola | nucleus | 25.28 | 28.76 |
| CDX83022 | Canola | nucleus | 25.28 | 28.03 |
| CDY53423 | Canola | nucleus | 24.15 | 26.89 |
| VIT_14s0108g00480.t01 | Wine grape | plastid | 32.83 | 26.52 |
| GSMUA_Achr2P07390_001 | Banana | nucleus | 20.38 | 23.68 |
| Bra033788.1-P | Field mustard | nucleus | 17.74 | 10.71 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.4 | Gene3D:4.10.280.10 | EntrezGene:4343984 | EMBL:AK070963 | EMBL:AY222337 |
| ProteinID:BAD30518.1 | ProteinID:BAD30583.1 | ProteinID:BAF22264.1 | ProteinID:BAT02757.1 | ncoils:Coil | ProteinID:EEE67640.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| EMBL:HQ858856 | InterPro:IPR011598 | InterPro:IPR036638 | EnsemblPlantsGene:Os07g0628500 | EnsemblPlants:Os07t0628500-01 | PFscan:PS50888 |
| PANTHER:PTHR23042 | PANTHER:PTHR23042:SF51 | UniProt:Q69V10 | SUPFAM:SSF47459 | UniParc:UPI00003FE7BD | RefSeq:XP_015645391.1 |
| RefSeq:XP_015645392.1 | RefSeq:XP_015645393.1 | InterPro:bHLH_dom | SEG:seg | : | : |
Description
basic Helix-Loop-Helix protein 1, basic helix-loop-helix protein 062Basic helix-loop-helix dimerisation region bHLH domain containing protein. (Os07t0628500-01);Basic helix-loop-helix dimerisation region bHLH domain containing protein. (Os07t0628500-02)
Coordinates
chr7:-:26039710..26042226
Molecular Weight (calculated)
29688.0 Da
IEP (calculated)
7.305
GRAVY (calculated)
-0.824
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MVPRDRVNAA AAGGGGEGRL VQSGIVNKKC DKKAPKRIHK SEREKLKRDK QNDLFNELGN LLEPDRQNNG KACVLGETTR ILKDLLSQVE SLRKENSSLK
101: NESHYVALER NELHDDNSML RTEILELQNE LRTRMEGNPV WSHVNTRPAL RVPYPTTGVF PVQHLPHLPV TTTAAFPQQL PVIIEQHYAA TPRELQLFPE
201: SATSEDSEPS QEHGISDHVT RPQPRYPTPT ATLPVNLFPV FPGRQDQQCS SGTSGTNEED RIGRS
101: NESHYVALER NELHDDNSML RTEILELQNE LRTRMEGNPV WSHVNTRPAL RVPYPTTGVF PVQHLPHLPV TTTAAFPQQL PVIIEQHYAA TPRELQLFPE
201: SATSEDSEPS QEHGISDHVT RPQPRYPTPT ATLPVNLFPV FPGRQDQQCS SGTSGTNEED RIGRS
001: MVSKTPSTSS DEANATADER CRKGKVPKRI NKAVRERLKR EHLNELFIEL ADTLELNQQN SGKASILCEA TRFLKDVFGQ IESLRKEHAS LLSESSYVTT
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE
Arabidopsis Description
BHLH47Transcription factor bHLH47 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.