Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plastid 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21793 | Canola | nucleus | 97.42 | 97.42 |
| Bra019509.1-P | Field mustard | nucleus | 97.0 | 96.58 |
| AT3G47640.1 | Thale cress | nucleus | 80.69 | 78.33 |
| CDX83022 | Canola | nucleus | 80.26 | 78.24 |
| CDY17794 | Canola | cytosol | 25.32 | 74.68 |
| CDX86900 | Canola | cytosol | 19.74 | 68.66 |
| CDY53423 | Canola | nucleus | 69.96 | 68.49 |
| KRH03461 | Soybean | nucleus | 42.06 | 43.56 |
| KRH56921 | Soybean | nucleus | 41.2 | 43.24 |
| Solyc03g116340.2.1 | Tomato | nucleus | 37.34 | 36.1 |
| VIT_17s0000g06000.t01 | Wine grape | nucleus | 39.06 | 35.55 |
| PGSC0003DMT400001617 | Potato | nucleus | 36.48 | 35.27 |
| GSMUA_AchrUn_... | Banana | nucleus | 28.76 | 31.6 |
| Os03t0379300-01 | Rice | nucleus | 31.76 | 29.37 |
| Zm00001d048901_P002 | Maize | nucleus | 31.33 | 26.64 |
| Zm00001d029339_P001 | Maize | nucleus | 30.04 | 25.93 |
| KXG28874 | Sorghum | nucleus | 30.47 | 25.63 |
| TraesCS2D01G163900.2 | Wheat | nucleus | 28.33 | 25.48 |
| TraesCS2B01G183300.1 | Wheat | nucleus | 28.33 | 25.38 |
| Os07t0628500-01 | Rice | nucleus | 28.76 | 25.28 |
| TraesCS2A01G157800.1 | Wheat | nucleus | 27.47 | 25.2 |
| EER99751 | Sorghum | nucleus | 28.76 | 25.19 |
| Zm00001d022225_P001 | Maize | nucleus | 28.76 | 25.19 |
| Os11t0601700-01 | Rice | nucleus | 29.18 | 24.46 |
| TraesCS2B01G095900.1 | Wheat | nucleus | 28.33 | 24.44 |
| KXG39270 | Sorghum | nucleus | 28.33 | 24.35 |
| HORVU2Hr1G028530.3 | Barley | cytosol, mitochondrion, nucleus | 27.9 | 23.99 |
| TraesCS4B01G125400.1 | Wheat | nucleus | 27.47 | 23.44 |
| GSMUA_Achr3P20020_001 | Banana | nucleus | 32.19 | 23.44 |
| Os08t0494375-00 | Rice | nucleus | 15.88 | 21.51 |
| TraesCS4A01G163300.1 | Wheat | mitochondrion | 20.6 | 20.96 |
| TraesCS2D01G079100.1 | Wheat | plastid | 28.76 | 20.36 |
| TraesCS2A01G081300.1 | Wheat | plastid | 28.33 | 19.53 |
| GSMUA_Achr2P07390_001 | Banana | nucleus | 18.88 | 19.3 |
| HORVU2Hr1G013450.3 | Barley | cytosol, mitochondrion, nucleus, plastid | 27.04 | 16.03 |
Protein Annotations
| EnsemblPlants:CDX77869 | EnsemblPlantsGene:GSBRNA2T00129054001 | Gene3D:4.10.280.10 | GO:A0A078CP60 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| ncoils:Coil | PANTHER:PTHR23042 | PANTHER:PTHR23042:SF51 | PFscan:PS50888 | ProteinID:CDX77869 | ProteinID:CDX77869.1 |
| SEG:seg | SUPFAM:SSF47459 | UniParc:UPI0004EEADB4 | MapMan:15.5.32 | MapMan:25.4.1.4 | : |
Description
BnaC03g53500D
Coordinates
chrLK031813:+:1276492..1278076
Molecular Weight (calculated)
25933.3 Da
IEP (calculated)
6.800
GRAVY (calculated)
-0.735
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSKTPSTST HEANASVDER SRKGKVPKRI NKAVRERLKR EHLNELFIEL ADSLELNQQN SGKASVLCEA TRFLKDVFGE IESLRKEHTS LLSESNYVTT
101: EKNELKEETS VLESEISRLQ SEIEAKVNQS KPDLNTSPAP EYHHHHHYQQ HAELASQFSG LPIFQGVAGF QQSSAATPPG ATVLVLPMQP DLQTQAPLMY
201: NSSNVSKPCP RYANAADSSW PSRLLGERLK ANE
101: EKNELKEETS VLESEISRLQ SEIEAKVNQS KPDLNTSPAP EYHHHHHYQQ HAELASQFSG LPIFQGVAGF QQSSAATPPG ATVLVLPMQP DLQTQAPLMY
201: NSSNVSKPCP RYANAADSSW PSRLLGERLK ANE
001: MVSKTPSTSS DEANATADER CRKGKVPKRI NKAVRERLKR EHLNELFIEL ADTLELNQQN SGKASILCEA TRFLKDVFGQ IESLRKEHAS LLSESSYVTT
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE
Arabidopsis Description
BHLH47Transcription factor bHLH47 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.