CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05709
EES07800
KXG38894

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G47640.1	EES05709	AT4G17680.1	21798944
AT3G47640.1	KXG38894	AT4G17680.1	21798944
AT3G47640.1	EES07800	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029339_P001	Maize	nucleus	83.03	83.33
Os03t0379300-01	Rice	nucleus	62.73	67.46
TraesCS2B01G095900.1	Wheat	nucleus	61.62	61.85
EER99751	Sorghum	nucleus	50.92	51.88
TraesCS2A01G081300.1	Wheat	plastid	63.47	50.89
TraesCS2D01G079100.1	Wheat	plastid	61.62	50.76
HORVU2Hr1G013450.3	Barley	cytosol, mitochondrion, nucleus, plastid	63.84	44.02
GSMUA_AchrUn_...	Banana	nucleus	33.21	42.45
CDY17794	Canola	cytosol	11.81	40.51
CDX86900	Canola	cytosol	8.86	35.82
KRH56921	Soybean	nucleus	28.41	34.68
KXG28874	Sorghum	nucleus	34.32	33.57
KRH03461	Soybean	nucleus	27.31	32.89
CDY21793	Canola	nucleus	24.72	28.76
Bra019509.1-P	Field mustard	nucleus	24.72	28.63
AT3G47640.1	Thale cress	nucleus	25.09	28.33
CDX77869	Canola	nucleus	24.35	28.33
Solyc03g116340.2.1	Tomato	nucleus	25.09	28.22
PGSC0003DMT400001617	Potato	nucleus	24.72	27.8
VIT_17s0000g06000.t01	Wine grape	nucleus	25.83	27.34
CDX83022	Canola	nucleus	23.99	27.2
CDY53423	Canola	nucleus	23.25	26.47
VIT_14s0108g00480.t01	Wine grape	plastid	31.37	25.91
GSMUA_Achr2P07390_001	Banana	nucleus	20.3	24.12
Bra033788.1-P	Field mustard	nucleus	16.24	10.02

Protein Annotations

EnsemblPlants:KXG39270	EnsemblPlantsGene:SORBI_3001G355600	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR23042	PANTHER:PTHR23042:SF62	PFscan:PS50888	ProteinID:KXG39270	ProteinID:KXG39270.1	SEG:seg
SUPFAM:SSF47459	UniParc:UPI00081ABB44	UniProt:A0A1B6QMX4	MapMan:15.5.32	MapMan:25.4.1.4	:

Description

hypothetical protein

Coordinates

chr1:-:64529009..64533628

Molecular Weight (calculated)

29547.9 Da

IEP (calculated)

6.241

GRAVY (calculated)

-0.633

Length

271 amino acids

Sequence
(BLAST)

001: MVPSERGSVA TAVSTPAADK LLHGPISGKK KCKKPSPRKI HKAEREKLKR DHLNDLFVEL GNMLEADRQN NGKACILTDT TRILRELLVQ VDSLRKEHSN
101: LQNESHYVTM ERNEMQDENG MLRKEISELQ NELTMRGSGS PAGWGHGTAR SDPPLPHPTA VFSSEQAVQP ATIASIVFPL QQPLVPSAMT GPPYAAPPLE
201: LKLFPEVASA EGHEPCEDQE APNHVARPQA RYPTQSASWP VSLFSGLPGM EDEQCSSSTT GSSKTASTDI E

Best Arabidopsis Sequence Match ( AT3G47640.1 )
(BLAST)

001: MVSKTPSTSS DEANATADER CRKGKVPKRI NKAVRERLKR EHLNELFIEL ADTLELNQQN SGKASILCEA TRFLKDVFGQ IESLRKEHAS LLSESSYVTT
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE

Arabidopsis Description

BHLH47Transcription factor bHLH47 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.