Factsheet for VIT_14s0108g00480.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g06000.t01	Wine grape	nucleus	35.37	45.31
GSMUA_AchrUn_...	Banana	nucleus	28.66	44.34
Zm00001d048901_P002	Maize	nucleus	29.88	35.77
TraesCS2D01G163900.2	Wheat	nucleus	26.83	33.98
TraesCS2A01G157800.1	Wheat	nucleus	25.91	33.46
TraesCS2B01G183300.1	Wheat	nucleus	26.22	33.08
HORVU2Hr1G028530.3	Barley	cytosol, mitochondrion, nucleus	27.13	32.84
Os07t0628500-01	Rice	nucleus	26.52	32.83
GSMUA_Achr3P20020_001	Banana	nucleus	31.71	32.5
Zm00001d029339_P001	Maize	nucleus	26.52	32.22
Os03t0379300-01	Rice	nucleus	24.39	31.75
KXG39270	Sorghum	nucleus	25.91	31.37
TraesCS2B01G095900.1	Wheat	nucleus	25.61	31.11
TraesCS4B01G125400.1	Wheat	nucleus	25.3	30.4
KXG28874	Sorghum	nucleus	25.61	30.32
EER99751	Sorghum	nucleus	24.09	29.7
Os08t0494375-00	Rice	nucleus	15.55	29.65
Os11t0601700-01	Rice	nucleus	25.0	29.5
Zm00001d022225_P001	Maize	nucleus	23.48	28.95
TraesCS2D01G079100.1	Wheat	plastid	27.74	27.66
GSMUA_Achr2P07390_001	Banana	nucleus	18.6	26.75
TraesCS2A01G081300.1	Wheat	plastid	25.91	25.15
TraesCS4A01G163300.1	Wheat	mitochondrion	17.07	24.45
HORVU2Hr1G013450.3	Barley	cytosol, mitochondrion, nucleus, plastid	26.83	22.39

Protein Annotations

EntrezGene:100259339	wikigene:100259339	MapMan:15.5.32	MapMan:25.4.1.4	Gene3D:4.10.280.10	ProteinID:CBI22193
ProteinID:CBI22193.3	ncoils:Coil	UniProt:D7SX96	EMBL:FN595239	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EntrezGene:LOC100259339
wikigene:LOC100259339	PFscan:PS50888	PANTHER:PTHR23042	PANTHER:PTHR23042:SF51	SUPFAM:SSF47459	TIGR:TC53730
UniParc:UPI00015C9E95	ArrayExpress:VIT_14s0108g00480	EnsemblPlantsGene:VIT_14s0108g00480	EnsemblPlants:VIT_14s0108g00480.t01	RefSeq:XP_002283284	RefSeq:XP_002283284.1
RefSeq:XP_002283289	RefSeq:XP_002283289.1	InterPro:bHLH_dom	SEG:seg	:	:

Description

No Description!

Coordinates

chr14:-:29249102..29252798

Molecular Weight (calculated)

35899.1 Da

IEP (calculated)

7.126

GRAVY (calculated)

-0.648

Length

328 amino acids

Sequence
(BLAST)

001: MASKSLGAQH TPSRGTKPVA TLFPLRHPCQ SRVYEIHPSF PQPSLLVSSS SSLYTCSKPT SPDSKGVDFL EETKSGDGCY KNLNMVSEVP SDNDGCVAGE
101: TVVGRLSPRK KNPGKVPKKI HKAEREKLKR DHLNVLFLEL GNILDSAQQN NGKACVLTDA TRLLRDLLAQ VDCLKRDNAA LLSESHYVSM EKNELREDNS
201: ALEAQIKKLQ SELEERIRSK PAWNSDPSQL DHNSTAPQLP EDHLMFPVTD HASQTAPVVG PVFVVPLHQD LQTFPQPNAA ASNVSRPHAR YPSPSDCWPS
301: QILDSQLKTP EQHEVGSGTS SGTSSRGD

Best Arabidopsis Sequence Match ( AT3G47640.1 )
(BLAST)

001: MVSKTPSTSS DEANATADER CRKGKVPKRI NKAVRERLKR EHLNELFIEL ADTLELNQQN SGKASILCEA TRFLKDVFGQ IESLRKEHAS LLSESSYVTT
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE

Arabidopsis Description

BHLH47Transcription factor bHLH47 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.