Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | nucleus | 30.0 | 45.28 |
| CDY17794 | Canola | cytosol | 10.62 | 43.04 |
| CDX86900 | Canola | cytosol | 8.75 | 41.79 |
| KRH56921 | Soybean | nucleus | 26.25 | 37.84 |
| KRH03461 | Soybean | nucleus | 26.56 | 37.78 |
| AT3G47640.1 | Thale cress | nucleus | 25.94 | 34.58 |
| VIT_17s0000g06000.t01 | Wine grape | nucleus | 27.5 | 34.38 |
| Solyc03g116340.2.1 | Tomato | nucleus | 25.31 | 33.61 |
| PGSC0003DMT400001617 | Potato | nucleus | 25.0 | 33.2 |
| CDX77869 | Canola | nucleus | 23.44 | 32.19 |
| CDY21793 | Canola | nucleus | 23.44 | 32.19 |
| Bra019509.1-P | Field mustard | nucleus | 23.44 | 32.05 |
| VIT_14s0108g00480.t01 | Wine grape | plastid | 32.5 | 31.71 |
| CDY53423 | Canola | nucleus | 23.44 | 31.51 |
| CDX83022 | Canola | nucleus | 22.81 | 30.54 |
| GSMUA_Achr2P07390_001 | Banana | nucleus | 15.62 | 21.93 |
| Bra033788.1-P | Field mustard | nucleus | 15.0 | 10.93 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P20020_001 | EnsemblPlants:GSMUA_Achr3T20020_001 | EnsemblPlantsGene:GSMUA_Achr3G20020_001 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| ncoils:Coil | PANTHER:PTHR23042 | PANTHER:PTHR23042:SF51 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg |
| SUPFAM:SSF47459 | UniParc:UPI0002960E9E | UniProt:M0SG68 | MapMan:15.5.32 | MapMan:25.4.1.4 | : |
Description
Putative Transcription factor bHLH47 [Source:GMGC_GENE;Acc:GSMUA_Achr3G20020_001]
Coordinates
chr3:-:21234657..21239175
Molecular Weight (calculated)
35516.0 Da
IEP (calculated)
7.437
GRAVY (calculated)
-0.692
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLPRWVPNE REGHVEADGQ WDVPNEHGRR LSLSLSLRLS PGEQRLVSLE TWKESNSVLS RRVVCSLQTR NRNMVAKASA SMASGANAVS EQSAGRSIPS
101: TKMSRKVPKK EHKAMREKMK RDHLNDLFLE LGQALETSRQ NNGKASILVD ATRLLRDLLA QVEVLRKENV TLMNESHYVT EEKNELQDEK NVLKAEVEKL
201: QNVLHEGTQS DPMAEWHSKS DLAPPTLPQS LTAALPMQQQ PVAPLIDIAL HQDLNPLSDA AISPPSPAAT SKVSRPHARY PTPSDTWSLE LLSRNQRAAH
301: EAQHGSGSTS DGRVEGLDNQ
101: TKMSRKVPKK EHKAMREKMK RDHLNDLFLE LGQALETSRQ NNGKASILVD ATRLLRDLLA QVEVLRKENV TLMNESHYVT EEKNELQDEK NVLKAEVEKL
201: QNVLHEGTQS DPMAEWHSKS DLAPPTLPQS LTAALPMQQQ PVAPLIDIAL HQDLNPLSDA AISPPSPAAT SKVSRPHARY PTPSDTWSLE LLSRNQRAAH
301: EAQHGSGSTS DGRVEGLDNQ
001: MVSKTPSTSS DEANATADER CRKGKVPKRI NKAVRERLKR EHLNELFIEL ADTLELNQQN SGKASILCEA TRFLKDVFGQ IESLRKEHAS LLSESSYVTT
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE
Arabidopsis Description
BHLH47Transcription factor bHLH47 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.