CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX81371
CDX85408
CDX86235
CDX90145
CDX91612
CDX93236
CDX93238
CDX94610
CDY05631
CDY07031
CDY07638
CDY15674
CDY27099
CDY30756
CDY30806
CDY33903
CDY34107
CDY35734
CDY53849
CDY57127
CDY61778

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36690.1	CDX90145	AT1G28360.1	21798944
AT4G36690.1	CDX94610	AT1G28360.1	21798944
AT4G36690.1	CDY15674	AT1G28360.1	21798944
AT4G36690.1	CDY30806	AT1G28360.1	21798944
AT4G36690.1	CDY34107	AT1G28360.1	21798944
AT4G36690.1	CDY35734	AT1G28360.1	21798944
AT4G36690.1	CDX93236	AT2G39760.1	21798944
AT4G36690.1	CDX93238	AT2G39760.1	21798944
AT4G36690.1	CDY07031	AT2G39760.1	21798944
AT4G36690.1	CDY07638	AT2G39760.1	21798944
AT4G36690.1	CDY61778	AT2G39760.1	21798944
AT4G36690.1	CDX81371	AT3G50670.1	21798944
AT4G36690.1	CDY30756	AT3G50670.1	21798944
AT4G36690.1	CDY53849	AT3G50670.1	21798944
AT4G36690.1	CDY57127	AT3G50670.1	21798944
AT4G36690.1	CDX85408	AT5G49400.1	21798944
AT4G36690.1	CDX86235	AT5G49400.1	21798944
AT4G36690.1	CDY05631	AT5G49400.1	21798944
AT4G36690.1	CDY33903	AT5G49400.1	21798944
AT4G36690.1	CDX91612	AT5G51910.1	21798944
AT4G36690.1	CDY27099	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24773	Canola	nucleus	92.0	91.34
CDY67096	Canola	mitochondrion	40.36	89.88
CDX75589	Canola	mitochondrion	57.09	88.45
PGSC0003DMT400040069	Potato	cytosol	45.82	81.03
CDY12868	Canola	mitochondrion	32.55	78.51
AT4G36690.1	Thale cress	nucleus	75.27	72.25
HORVU5Hr1G090000.2	Barley	nucleus	50.73	70.28
GSMUA_Achr4P16510_001	Banana	nucleus	59.64	69.49
Solyc02g085570.2.1	Tomato	nucleus	68.0	67.03
PGSC0003DMT400033041	Potato	nucleus	67.09	66.37
CDY66742	Canola	nucleus	67.27	65.26
Solyc02g062920.2.1	Tomato	nucleus	66.0	64.82
CDY40492	Canola	nucleus	17.64	64.67
CDY12869	Canola	nucleus	57.45	63.71
CDY55407	Canola	nucleus	12.91	63.39
CDY40481	Canola	nucleus	59.27	63.18
HORVU4Hr1G029030.3	Barley	nucleus	62.36	62.36
GSMUA_Achr4P11020_001	Banana	nucleus	65.27	62.33
TraesCS4D01G143400.3	Wheat	nucleus	62.0	62.11
EES08974	Sorghum	nucleus	61.45	62.02
VIT_13s0139g00410.t01	Wine grape	cytosol	7.64	61.76
CDY30313	Canola	nucleus	65.82	61.56
KRH64800	Soybean	nucleus	65.27	59.83
CDY46188	Canola	nucleus	64.18	59.43
TraesCS4A01G171800.3	Wheat	nucleus	62.36	59.04
Os11t0636900-02	Rice	nucleus	61.45	58.88
TraesCS4B01G145600.4	Wheat	nucleus	60.91	58.88
TraesCSU01G068100.3	Wheat	nucleus	62.0	58.79
TraesCS4D01G150000.4	Wheat	nucleus	61.09	58.64
KRH56450	Soybean	nucleus	64.36	58.51
CDY03767	Canola	nucleus	63.64	57.66
TraesCS4A01G165000.4	Wheat	nucleus	61.27	57.61
KXG28995	Sorghum	nucleus	62.73	57.5
CDY40493	Canola	nucleus	28.91	56.58
PGSC0003DMT400000919	Potato	nucleus	61.82	56.2
Solyc12g008750.1.1	Tomato	nucleus	61.82	56.01
HORVU5Hr1G089980.2	Barley	nucleus, plastid	57.27	55.36
HORVU4Hr1G038850.14	Barley	nucleus	60.18	54.71
CDY55589	Canola	mitochondrion	24.0	52.59
TraesCS5D01G375600.1	Wheat	nucleus	56.36	50.74
TraesCS5A01G366000.1	Wheat	nucleus	55.64	50.49
TraesCS5B01G368400.1	Wheat	nucleus	54.36	47.46
KXG29128	Sorghum	nucleus	46.55	40.44
TraesCS2B01G144600.1	Wheat	nucleus	11.27	38.04
TraesCS2A01G122400.1	Wheat	nucleus	11.27	38.04
TraesCS5B01G041900.1	Wheat	nucleus	11.45	37.95
TraesCS5A01G040700.1	Wheat	cytosol	11.27	37.35
VIT_13s0139g00390.t01	Wine grape	plasma membrane	9.82	34.62
TraesCS5D01G071700.1	Wheat	nucleus	9.82	31.4
TraesCS5D01G071600.1	Wheat	nucleus	10.18	29.95
TraesCS5B01G067400.1	Wheat	nucleus	10.0	29.41
Zm00001d007635_P004	Maize	nucleus	26.55	20.74
CDX84685	Canola	nucleus	8.0	11.83
CDX79530	Canola	nucleus	18.73	8.55
CDX84686	Canola	nucleus	8.73	5.35

Protein Annotations

MapMan:16.4.1.2.11.2	Gene3D:3.30.70.330	GO:A0A078HCG5	UniProt:A0A078HCG5	EnsemblPlants:CDY35472	ProteinID:CDY35472
ProteinID:CDY35472.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150
GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00058494001	InterPro:IPR000504	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23139	PANTHER:PTHR23139:SF80	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	TIGRFAMs:TIGR01642	InterPro:U2AF_lg	UniParc:UPI0004EDFF82
SEG:seg	:	:	:	:	:

Description

BnaC03g61880DBnaC03g61880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HCG5]

Coordinates

chrLK032352:-:336020..339666

Molecular Weight (calculated)

60608.9 Da

IEP (calculated)

8.700

GRAVY (calculated)

-0.807

Length

550 amino acids

Sequence
(BLAST)

001: MSDFEDHKGN VTAVDGFEAD DNGGRGGEIE DQTDSKSQGE TRDNDRESSR SKDKGSVDRS RDRSKERSRD RERERRSRHR DRSRDRGDRR ERGSRDRDDD
101: YRRGSRDRDY DRRRDDRGDR RRHRSRSRSK DRSRRRSRSR SPSKTKRVSG FDMAPPASAM LATGATVTGQ VPPPPPTLPP AGMFPNIFPL QTGQAFGGLP
201: MMPIQAMTQQ ATRHARRVYV GGLSPVANEQ SVATFFSQVM AAVGGNTAGP GDAVVNVYIN HEKKFAFVEM RSVEEASNAM SLDGIIFEGS PVKVRRPSDY
301: NPSLAASLGP SQPSPHLNLA AVGLTPGASG GLEGPDRIFV GGLPYYFTEA QVRELLESFG ALKGFDLVKD RETGNSKGYA FCVYQDVAVT DIACVALNGI
401: KMGDKTLTVR RANQGAMQPK PEQESVLLHA QQQIAFQMNM FQPGPVATTV VCLTQVVTED ELKDDEEFED IMEDMRQEGG KFGMLTSVVI PRPSPSGEPV
501: PGLGKVFLKY VDTEGSSRAR SGMNGRKFGG NEVVAVFYPE DKFDQGEYGA

Best Arabidopsis Sequence Match ( AT4G36690.4 )
(BLAST)

001: MSEFEDHEGN GTVADAIYDE ENGGRDGEIE DQLDSKPKRE SRDHERETSR SKDREREKGR DKDRERDSEV SRRSRDRDGE KSKERSRDKD RDHRERHHRS
101: SRHRDHSRER GERRERGGGR RSRRSRSRSK DRSERRTRSR SPSKSKQRVS GFDMAPPASA MLAAGAAVTG QVPPAPPTLP GAGMFPNMFP LPTGQSFGGL
201: SMMPIQAMTQ QATRHARRVY VGGLSPTANE QSVATFFSQV MAAVGGNTAG PGDAVVNVYI NHEKKFAFVE MRSVEEASNA MSLDGIIFEG APVKVRRPSD
301: YNPSLAATLG PSQPSPHLNL AAVGLTPGAS GGLEGPDRIF VGGLPYYFTE SQVRELLESF GGLKGFDLVK DRETGNSKGY AFCVYQDLSV TDIACAALNG
401: IKMGDKTLTV RRANQGTMLQ KPEQENVLLH AQQQIAFQRV MLQPGAVATT VVCLTQVVTE DELRDDEEYG DIMEDMRQEG GKFGALTNVV IPRPSPNGEP
501: VAGLGKVFLK YADTDGSTRA RFGMNGRKFG GNEVVAVYYP EDKFEQGDYG A

Arabidopsis Description

U2AF65AATU2AF65A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.