Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34107 | Canola | nucleus | 92.35 | 93.37 |
| CDY15674 | Canola | nucleus | 77.6 | 79.78 |
| CDY35734 | Canola | nucleus | 79.78 | 78.92 |
| CDX90145 | Canola | nucleus | 79.23 | 78.8 |
| AT1G28360.1 | Thale cress | nucleus | 79.78 | 77.25 |
| CDX94610 | Canola | nucleus | 68.85 | 75.9 |
| VIT_10s0003g00130.t01 | Wine grape | nucleus | 50.82 | 61.18 |
| KRH21385 | Soybean | nucleus | 52.46 | 58.9 |
| Solyc02g077840.1.1 | Tomato | nucleus | 46.99 | 55.84 |
| PGSC0003DMT400076408 | Potato | nucleus | 46.45 | 55.56 |
| KRH10926 | Soybean | nucleus | 50.82 | 54.07 |
| GSMUA_Achr8P15820_001 | Banana | nucleus | 40.98 | 44.12 |
| Zm00001d012584_P001 | Maize | nucleus | 37.16 | 41.21 |
| TraesCS3D01G321700.1 | Wheat | nucleus | 37.16 | 39.31 |
| TraesCS3A01G328100.1 | Wheat | nucleus | 37.16 | 39.31 |
| CDY25733 | Canola | nucleus | 29.51 | 39.13 |
| TraesCS3B01G357600.1 | Wheat | nucleus | 37.16 | 39.08 |
| EES01601 | Sorghum | nucleus | 36.61 | 37.85 |
| CDY70175 | Canola | nucleus | 34.43 | 37.5 |
| CDY70796 | Canola | nucleus | 32.79 | 37.27 |
| CDX90146 | Canola | nucleus | 34.97 | 37.21 |
| Zm00001d043204_P001 | Maize | nucleus | 37.7 | 37.1 |
| CDY02523 | Canola | nucleus | 34.43 | 37.06 |
| CDY15673 | Canola | nucleus | 33.88 | 36.9 |
| CDY69368 | Canola | nucleus | 34.43 | 36.63 |
| CDY34104 | Canola | nucleus | 32.24 | 36.42 |
| CDX97640 | Canola | nucleus | 36.61 | 35.45 |
| CDY34105 | Canola | nucleus | 30.6 | 35.44 |
| Os05t0497200-01 | Rice | nucleus | 36.07 | 34.92 |
| CDY61213 | Canola | nucleus | 33.88 | 34.83 |
| CDY24111 | Canola | nucleus | 33.33 | 34.66 |
| CDX98534 | Canola | nucleus | 36.61 | 34.18 |
| CDY22810 | Canola | nucleus | 37.7 | 33.99 |
| CDY45936 | Canola | nucleus | 37.16 | 33.83 |
| CDY25874 | Canola | nucleus | 36.61 | 33.5 |
| CDX82442 | Canola | nucleus | 37.16 | 33.33 |
| CDX75817 | Canola | nucleus | 37.16 | 33.33 |
| CDY20105 | Canola | nucleus | 37.7 | 33.01 |
| CDX89866 | Canola | nucleus | 32.24 | 32.78 |
| CDY37113 | Canola | mitochondrion, nucleus | 37.16 | 32.69 |
| CDX82253 | Canola | nucleus | 37.7 | 32.09 |
| CDY36045 | Canola | nucleus | 37.7 | 31.8 |
| CDY18185 | Canola | nucleus | 31.15 | 31.67 |
| TraesCS1D01G314700.1 | Wheat | nucleus | 31.69 | 31.52 |
| TraesCS1B01G326500.1 | Wheat | nucleus | 31.69 | 31.52 |
| TraesCS1A01G314200.1 | Wheat | nucleus | 32.24 | 31.38 |
| HORVU1Hr1G067160.1 | Barley | nucleus | 32.79 | 31.25 |
| CDY32314 | Canola | nucleus | 37.16 | 31.19 |
| CDX96955 | Canola | nucleus | 32.79 | 31.09 |
| CDY14914 | Canola | nucleus | 32.79 | 31.09 |
| Zm00001d010676_P001 | Maize | nucleus | 34.43 | 30.73 |
| Zm00001d038584_P001 | Maize | nucleus | 33.33 | 29.05 |
| KXG22269 | Sorghum | nucleus | 32.79 | 28.04 |
| CDY61906 | Canola | cytosol | 20.22 | 27.41 |
| CDX70526 | Canola | nucleus | 26.23 | 22.64 |
| CDX78545 | Canola | nucleus | 25.68 | 22.17 |
| CDY11748 | Canola | nucleus | 26.23 | 20.78 |
| CDX90126 | Canola | nucleus | 26.23 | 20.51 |
| CDX94591 | Canola | nucleus | 26.78 | 20.33 |
| CDY15690 | Canola | nucleus | 26.23 | 20.08 |
| CDY26605 | Canola | nucleus | 28.96 | 18.03 |
| CDY16048 | Canola | nucleus | 28.42 | 17.81 |
| CDY19407 | Canola | nucleus | 29.51 | 17.09 |
| CDY36131 | Canola | nucleus | 27.87 | 17.06 |
| CDY51586 | Canola | nucleus | 27.32 | 16.95 |
| CDY24422 | Canola | nucleus | 27.32 | 16.72 |
| CDY03876 | Canola | nucleus | 27.32 | 16.72 |
| CDY26598 | Canola | nucleus | 17.49 | 16.16 |
| CDY16037 | Canola | nucleus | 17.49 | 16.16 |
| CDY72607 | Canola | nucleus | 27.32 | 15.48 |
| CDX85621 | Canola | nucleus | 28.42 | 15.2 |
| CDY68296 | Canola | nucleus | 26.78 | 15.17 |
| CDY02618 | Canola | nucleus | 27.32 | 15.06 |
| CDX91091 | Canola | nucleus | 27.87 | 15.0 |
| CDY13901 | Canola | nucleus | 27.32 | 14.88 |
| CDX70826 | Canola | nucleus | 26.78 | 14.8 |
| CDY58106 | Canola | nucleus | 26.78 | 14.76 |
| CDX88931 | Canola | nucleus | 26.23 | 14.59 |
| CDY46294 | Canola | nucleus | 3.28 | 4.17 |
| CDX98022 | Canola | nucleus | 4.37 | 4.04 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | GO:A0A078GZ76 | UniProt:A0A078GZ76 | InterPro:AP2/ERF-transcript_factor | InterPro:AP2/ERF_dom |
| InterPro:AP2/ERF_dom_sf | EnsemblPlants:CDY30806 | ProteinID:CDY30806 | ProteinID:CDY30806.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00046250001 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PIRSF:PIRSF038123 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31677 | SMART:SM00380 |
| SUPFAM:SSF54171 | UniParc:UPI0004EDE46F | SEG:seg | : | : | : |
Description
BnaC05g21820DBnaC05g21820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GZ76]
Coordinates
chrLK032261:+:112133..112684
Molecular Weight (calculated)
20244.8 Da
IEP (calculated)
10.130
GRAVY (calculated)
-0.527
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MASTTCGREV HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT FDTPEEAALA YDGAARFLRG IKAKTNFPSP LSLDLNHIPS PSAAVAAADN HHNHQLWFSA
101: PPPPPPLHIS GNYRHHGLYL RTRVLNDRTS DSPSTEAPFY FTASPAAATS SPRALELMSS SPSSPTVRRG LAIDLNEPPP LWL
101: PPPPPPLHIS GNYRHHGLYL RTRVLNDRTS DSPSTEAPFY FTASPAAATS SPRALELMSS SPSSPTVRRG LAIDLNEPPP LWL
001: MASTTCAREV HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT FDTPEEAALA YDGAARFLRG IKAKTNFPSP LSLDLNHLPS APSAATAAAN NQPHQHQQLW
101: FAAPPPVPPS SDHHHQHHRI FLRTGVLNDK TSDYSSTEAP LYFTSSPNTA TSSPGYQVVG FPMMNSSPSP VTVRRGLAID LNEPPPLWL
101: FAAPPPVPPS SDHHHQHHRI FLRTGVLNDK TSDYSSTEAP LYFTSSPNTA TSSPGYQVVG FPMMNSSPSP VTVRRGLAID LNEPPPLWL
Arabidopsis Description
ERF12Ethylene-responsive transcription factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q94ID6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.