Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02523 | Canola | nucleus | 92.75 | 75.29 |
| CDY61213 | Canola | nucleus | 71.01 | 55.06 |
| CDY24111 | Canola | nucleus | 68.12 | 53.41 |
| CDX97640 | Canola | nucleus | 67.39 | 49.21 |
| AT1G53170.1 | Thale cress | nucleus | 65.94 | 49.19 |
| CDX98534 | Canola | nucleus | 66.67 | 46.94 |
| CDX75817 | Canola | nucleus | 66.67 | 45.1 |
| CDX82442 | Canola | nucleus | 66.67 | 45.1 |
| CDY20105 | Canola | nucleus | 65.22 | 43.06 |
| KRH55195 | Soybean | nucleus | 55.8 | 42.08 |
| KRH27281 | Soybean | nucleus | 57.97 | 41.45 |
| CDY32314 | Canola | nucleus | 65.22 | 41.28 |
| KRH22040 | Soybean | nucleus | 57.25 | 40.93 |
| CDY15673 | Canola | nucleus | 48.55 | 39.88 |
| CDY70175 | Canola | nucleus | 48.55 | 39.88 |
| CDY25874 | Canola | nucleus | 57.25 | 39.5 |
| CDY45936 | Canola | nucleus | 57.25 | 39.3 |
| CDY70796 | Canola | nucleus | 45.65 | 39.13 |
| CDX90146 | Canola | nucleus | 48.55 | 38.95 |
| CDY69368 | Canola | nucleus | 47.83 | 38.37 |
| CDY34104 | Canola | nucleus | 44.2 | 37.65 |
| CDY34105 | Canola | nucleus | 41.3 | 36.08 |
| CDY14914 | Canola | nucleus | 45.65 | 32.64 |
| CDY18185 | Canola | nucleus | 42.03 | 32.22 |
| CDX96955 | Canola | nucleus | 44.93 | 32.12 |
| CDX89866 | Canola | nucleus | 41.3 | 31.67 |
| CDX94610 | Canola | nucleus | 37.68 | 31.33 |
| CDY22810 | Canola | nucleus | 44.93 | 30.54 |
| CDY34107 | Canola | nucleus | 39.86 | 30.39 |
| CDY61906 | Canola | cytosol | 29.71 | 30.37 |
| CDY37113 | Canola | mitochondrion, nucleus | 45.65 | 30.29 |
| CDX90145 | Canola | nucleus | 39.86 | 29.89 |
| CDY30806 | Canola | nucleus | 39.13 | 29.51 |
| CDY36045 | Canola | nucleus | 46.38 | 29.49 |
| CDX82253 | Canola | nucleus | 45.65 | 29.3 |
| CDY35734 | Canola | nucleus | 39.13 | 29.19 |
| CDY15674 | Canola | nucleus | 36.96 | 28.65 |
| CDX70526 | Canola | nucleus | 33.33 | 21.7 |
| CDX78545 | Canola | nucleus | 32.61 | 21.23 |
| CDY11748 | Canola | nucleus | 34.06 | 20.35 |
| CDX90126 | Canola | nucleus | 34.06 | 20.09 |
| CDY15690 | Canola | nucleus | 34.78 | 20.08 |
| CDX94591 | Canola | nucleus | 34.78 | 19.92 |
| CDY16048 | Canola | nucleus | 36.23 | 17.12 |
| CDY26605 | Canola | nucleus | 36.23 | 17.01 |
| CDY03876 | Canola | nucleus | 36.23 | 16.72 |
| CDY51586 | Canola | nucleus | 35.51 | 16.61 |
| CDY36131 | Canola | nucleus | 34.78 | 16.05 |
| CDY24422 | Canola | nucleus | 34.78 | 16.05 |
| CDY19407 | Canola | nucleus | 34.78 | 15.19 |
| CDY72607 | Canola | nucleus | 34.78 | 14.86 |
| CDY68296 | Canola | nucleus | 34.06 | 14.55 |
| CDX88931 | Canola | nucleus | 34.06 | 14.29 |
| CDY02618 | Canola | nucleus | 34.06 | 14.16 |
| CDY16037 | Canola | nucleus | 20.29 | 14.14 |
| CDY13901 | Canola | nucleus | 34.06 | 13.99 |
| CDX70826 | Canola | nucleus | 33.33 | 13.9 |
| CDY58106 | Canola | nucleus | 33.33 | 13.86 |
| CDX91091 | Canola | nucleus | 34.06 | 13.82 |
| CDX85621 | Canola | nucleus | 34.06 | 13.74 |
| CDY26598 | Canola | nucleus | 19.57 | 13.64 |
| CDY46294 | Canola | nucleus | 2.9 | 2.78 |
| CDX98022 | Canola | nucleus | 3.62 | 2.53 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | GO:A0A078GM97 | UniProt:A0A078GM97 | InterPro:AP2/ERF-transcript_factor | InterPro:AP2/ERF_dom |
| InterPro:AP2/ERF_dom_sf | EnsemblPlants:CDY25733 | ProteinID:CDY25733 | ProteinID:CDY25733.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00033098001 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PIRSF:PIRSF038123 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | SMART:SM00380 |
| SUPFAM:SSF54171 | UniParc:UPI0004EE106E | SEG:seg | : | : | : |
Description
BnaC03g69420DBnaC03g69420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GM97]
Coordinates
chrLK032179:-:475346..476013
Molecular Weight (calculated)
15292.2 Da
IEP (calculated)
10.595
GRAVY (calculated)
-0.546
Length
138 amino acids
Sequence
(BLAST)
(BLAST)
001: MTKMVLKPDP NLTQSNAKEI PYRGVRKRPW GRYAAEIRDP RKKTRVWLGT FDTAQQAARA YDAAAREFRG AKAKTNFPTS LELNVNDGGY SRSPSQSITV
101: DSASPTVARL IPVARHVYLF NMTAFPLAAT CGVQSESD
101: DSASPTVARL IPVARHVYLF NMTAFPLAAT CGVQSESD
001: MAKMGLKPDP ATTNQTHNNA KEIRYRGVRK RPWGRYAAEI RDPGKKTRVW LGTFDTAEEA ARAYDTAARD FRGAKAKTNF PTFLELSDQK VPTGFARSPS
101: QSSTLDCASP PTLVVPSATA GNVPPQLELS LGGGGGGSCY QIPMSRPVYF LDLMGIGNVG RGQPPPVTSA FRSPVVHVAT KMACGAQSDS DSSSVVDFEG
201: GMEKRSQLLD LDLNLPPPSE QA
101: QSSTLDCASP PTLVVPSATA GNVPPQLELS LGGGGGGSCY QIPMSRPVYF LDLMGIGNVG RGQPPPVTSA FRSPVVHVAT KMACGAQSDS DSSSVVDFEG
201: GMEKRSQLLD LDLNLPPPSE QA
Arabidopsis Description
ERF4Ethylene-responsive transcription factor 4 [Source:UniProtKB/Swiss-Prot;Acc:O80340]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.