CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY02297
CDY09572

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G24590.1	CDY02297	AT1G30490.1	17376809
AT1G24590.1	CDY09572	AT1G30490.1	17376809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012499.1-P	Field mustard	nucleus	97.97	97.97
CDY03876	Canola	nucleus	96.61	95.32
CDY36131	Canola	nucleus	81.69	80.6
CDY24422	Canola	nucleus	80.68	79.6
AT1G24590.1	Thale cress	nucleus	82.37	79.41
CDY25733	Canola	nucleus	16.61	35.51
PGSC0003DMT400011492	Potato	nucleus	28.47	33.07
PGSC0003DMT400008830	Potato	nucleus	28.47	33.07
CDY26605	Canola	nucleus	31.86	31.97
CDY16048	Canola	nucleus	31.53	31.85
CDY70796	Canola	nucleus	17.29	31.68
CDY34105	Canola	nucleus	16.95	31.65
CDY34104	Canola	nucleus	17.29	31.48
CDX90146	Canola	nucleus	18.31	31.4
CDY02523	Canola	nucleus	17.97	31.18
CDY70175	Canola	nucleus	17.63	30.95
CDX78545	Canola	nucleus	22.03	30.66
CDY15673	Canola	nucleus	17.29	30.36
CDY69368	Canola	nucleus	17.63	30.23
CDX70526	Canola	nucleus	21.69	30.19
CDY19407	Canola	nucleus	31.86	29.75
CDX94610	Canola	nucleus	16.61	29.52
KRG99434	Soybean	nucleus	34.58	28.81
KRH45585	Soybean	nucleus	34.24	28.53
KRH74517	Soybean	nucleus	34.58	28.1
CDX97640	Canola	nucleus	17.97	28.04
CDY24111	Canola	nucleus	16.61	27.84
CDY34107	Canola	nucleus	16.95	27.62
CDX98534	Canola	nucleus	18.31	27.55
CDY15674	Canola	nucleus	16.61	27.53
CDY61213	Canola	nucleus	16.61	27.53
CDY30806	Canola	nucleus	16.95	27.32
CDX82442	Canola	nucleus	18.64	26.96
CDX75817	Canola	nucleus	18.64	26.96
CDY14914	Canola	nucleus	17.63	26.94
CDX96955	Canola	nucleus	17.63	26.94
KRH69639	Soybean	nucleus	35.59	26.85
VIT_00s0291g00030.t01	Wine grape	nucleus	37.63	26.81
Solyc05g013540.1.1	Tomato	nucleus	34.92	26.68
CDX89866	Canola	nucleus	16.27	26.67
CDY35734	Canola	nucleus	16.61	26.49
PGSC0003DMT400047887	Potato	nucleus	34.92	26.41
CDY11748	Canola	nucleus	20.68	26.41
CDY20105	Canola	nucleus	18.64	26.32
CDY18185	Canola	nucleus	15.93	26.11
CDX90145	Canola	nucleus	16.27	26.09
CDX90126	Canola	nucleus	20.68	26.07
CDY15690	Canola	nucleus	21.02	25.94
CDX82253	Canola	nucleus	18.64	25.58
CDY36045	Canola	nucleus	18.64	25.35
CDY32314	Canola	nucleus	18.64	25.23
CDY22810	Canola	nucleus	17.29	25.12
CDY37113	Canola	mitochondrion, nucleus	17.63	25.0
CDX94591	Canola	nucleus	20.34	24.9
CDY45936	Canola	nucleus	16.27	23.88
CDY25874	Canola	nucleus	15.93	23.5
CDY61906	Canola	cytosol	10.51	22.96
CDY68296	Canola	nucleus	22.71	20.74
CDY02618	Canola	nucleus	22.37	19.88
CDY58106	Canola	nucleus	22.37	19.88
CDY13901	Canola	nucleus	22.37	19.64
CDY72607	Canola	nucleus	21.36	19.5
CDX88931	Canola	nucleus	21.69	19.45
CDX70826	Canola	nucleus	21.69	19.34
CDX98022	Canola	nucleus	12.54	18.69
CDY26598	Canola	nucleus	12.54	18.69
CDX91091	Canola	nucleus	21.36	18.53
CDX85621	Canola	nucleus	21.36	18.42
CDY16037	Canola	nucleus	12.2	18.18
CDY46294	Canola	nucleus	2.71	5.56

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	GO:A0A078INR1	UniProt:A0A078INR1	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
EnsemblPlants:CDY51586	ProteinID:CDY51586	ProteinID:CDY51586.1	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00003789001	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31677	PANTHER:PTHR31677:SF9	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI0004EE8B9A	SEG:seg	:	:	:	:

Description

BnaA07g36710DBnaA07g36710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078INR1]

Coordinates

chrLK033009:+:1117..2004

Molecular Weight (calculated)

32737.3 Da

IEP (calculated)

7.393

GRAVY (calculated)

-0.621

Length

295 amino acids

Sequence
(BLAST)

001: MDEAIMRLEG AEHRETNNHS LKRKPSRTSS TAPCSPGSVP TAKSVPGAGA SGGTTIRYRG VRRRPWGRYA AEIRDPMSKE RRWLGTFDTA EEAACAYDCA
101: ARAMRGHKAR TNFVYPSPSL DSYHHRIFSS PPMNMFLRRD VLNSQSLSHF AYPLSNVSGP VYDSFANVND VSEDHSPKAK RFSTFDNESM ISILEPEPAG
201: SGLLQEIVQG FLPKPIPQQA ATPPTTIGVF PTMVETGFQS EFRLPDHVNV EGNGYGQLKY HGELGWVDHE GGFDSAKMHQ NGNAGMLYQY CFHDY

Best Arabidopsis Sequence Match ( AT1G24590.1 )
(BLAST)

001: MEEAIMRLEG AEHRETNIHS LKRKPSRTSS TAPGSPGGVT TAKAASGAGA SGVSTIRYRG VRRRPWGRYA AEIRDPLSKE RRWLGTFDTA EEAACAYDCA
101: ARAMRGLKAR TNFVYPMPSL DSYHHRIFSS PPMNMFLLRD VLNSQSLSPL TTFAYPPCNL SNVNDVVHES FTNVNDVCED LSPKAKRSST IENESLISNI
201: FEPEPASSGL LQEIVQGFLP KPISQHASIP PKSNQQSVGV FPTMPESGFQ TDVRLADFHV EGNGFGQVKY HGELGWADHE NGFDSAKMQQ NGNGGMFYQY
301: CFHDDY

Arabidopsis Description

ESR2Ethylene-responsive transcription factor ESR2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYK5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.