Factsheet for VIT_00s0291g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_10s0003g04670.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G24590.1	VIT_10s0003g04670.t01	AT1G30490.1	17376809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74517	Soybean	nucleus	39.61	45.18
PGSC0003DMT400011492	Potato	nucleus	26.81	43.7
PGSC0003DMT400008830	Potato	nucleus	26.81	43.7
KRH45585	Soybean	nucleus	35.51	41.53
KRH69639	Soybean	nucleus	39.13	41.43
KRG99434	Soybean	nucleus	35.02	40.96
AT1G24590.1	Thale cress	nucleus	28.02	37.91
CDY51586	Canola	nucleus	26.81	37.63
CDY03876	Canola	nucleus	27.05	37.46
CDY24422	Canola	nucleus	26.81	37.12
Bra012499.1-P	Field mustard	nucleus	26.33	36.95
GSMUA_AchrUn_...	Banana	nucleus	24.88	36.79
CDY36131	Canola	nucleus	26.33	36.45
Bra010972.1-P	Field mustard	nucleus	26.33	36.21
PGSC0003DMT400047887	Potato	nucleus	34.06	36.15
GSMUA_Achr9P01870_001	Banana	nucleus	25.12	36.11
Solyc05g013540.1.1	Tomato	nucleus	33.57	36.01
VIT_10s0003g00130.t01	Wine grape	nucleus	12.8	34.87
HORVU6Hr1G053460.1	Barley	nucleus	14.73	34.46
VIT_07s0141g00690.t01	Wine grape	nucleus	12.8	31.55
VIT_19s0014g02240.t01	Wine grape	nucleus	16.67	31.36
GSMUA_Achr3P19420_001	Banana	nucleus	20.77	30.28
VIT_14s0081g00520.t01	Wine grape	nucleus	12.08	29.24
VIT_12s0059g01460.t01	Wine grape	nucleus	14.25	28.92
VIT_12s0028g03270.t01	Wine grape	nucleus	14.73	28.91
VIT_10s0003g00140.t01	Wine grape	nucleus	14.25	25.99
VIT_14s0068g00860.t01	Wine grape	nucleus	15.94	25.38
VIT_19s0090g01080.t01	Wine grape	nucleus	15.7	25.19
TraesCS6A01G208700.1	Wheat	nucleus	16.67	23.08
TraesCS6B01G237700.1	Wheat	nucleus	16.43	22.82
TraesCS6D01G192200.1	Wheat	nucleus	16.43	22.82
Zm00001d050948_P001	Maize	nucleus	16.18	22.79
EES05354	Sorghum	nucleus	16.18	21.61
Os02t0594300-00	Rice	nucleus	16.18	19.42

Protein Annotations

EntrezGene:100263052	wikigene:100263052	MapMan:15.5.7.1	Gene3D:3.30.730.10	EMBL:AM438308	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	ProteinID:CAN60682	ProteinID:CAN60682.1	ProteinID:CCB45197	ProteinID:CCB45197.1	InterPro:DNA-bd_dom_sf
UniProt:F6GZ11	EMBL:FN594981	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	EntrezGene:LOC100263052	wikigene:LOC100263052	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31677	PANTHER:PTHR31677:SF9	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000210AC74
ArrayExpress:VIT_00s0291g00030	EnsemblPlantsGene:VIT_00s0291g00030	EnsemblPlants:VIT_00s0291g00030.t01	RefSeq:XP_002271778	RefSeq:XP_002271778.2	SEG:seg

Description

No Description!

Coordinates

chrUn:-:21787637..21788881

Molecular Weight (calculated)

44707.4 Da

IEP (calculated)

6.855

GRAVY (calculated)

-0.619

Length

414 amino acids

Sequence
(BLAST)

001: MEEAMRRLNG LTQTPESDPR EASSDHQKKC NSSATNNAAA SAATTTTTNK RCLRDGGGTG ATMRYRGVRR RPWGRYAAEI RDPQSKERRW LGTFDTAEEA
101: ACAYDCAARA MRGVKARTNF VYPTSPPHPA TEHLLPSFNF SKQSQPSIRD LPARHFSPTN WSSFSNPHAA DFSASAPHPS SSLNMLLLRD FLNSSSTSSL
201: SSPHLPFNDH IPYANASSPS LAPSSFSGCS SVNPSTNATP RAGDATHNNT TAFPGSCPSP SHVEDHLTYG LGGSTGASQG DDMDFFPSEP SDSGLLEEII
301: SRFFPKTSTK FCHPTKTLNC NEESVGAAAS HLGVNHILHD ARRGLDQNDR VGCCFDCQGA PHQFENFNGT SGSQAIPVPN QLPMNFHAAP DSMLDDIFQY
401: PELLNVIAAR VQNA

Best Arabidopsis Sequence Match ( AT1G24590.1 )
(BLAST)

001: MEEAIMRLEG AEHRETNIHS LKRKPSRTSS TAPGSPGGVT TAKAASGAGA SGVSTIRYRG VRRRPWGRYA AEIRDPLSKE RRWLGTFDTA EEAACAYDCA
101: ARAMRGLKAR TNFVYPMPSL DSYHHRIFSS PPMNMFLLRD VLNSQSLSPL TTFAYPPCNL SNVNDVVHES FTNVNDVCED LSPKAKRSST IENESLISNI
201: FEPEPASSGL LQEIVQGFLP KPISQHASIP PKSNQQSVGV FPTMPESGFQ TDVRLADFHV EGNGFGQVKY HGELGWADHE NGFDSAKMQQ NGNGGMFYQY
301: CFHDDY

Arabidopsis Description

ESR2Ethylene-responsive transcription factor ESR2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYK5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.