Factsheet for VIT_07s0141g00690.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P06660_001	Banana	nucleus	55.95	48.96
GSMUA_Achr3P29290_001	Banana	nucleus	41.67	44.03
VIT_14s0081g00520.t01	Wine grape	nucleus	42.86	42.11
KRH67315	Soybean	nucleus	40.48	39.53
VIT_10s0003g00130.t01	Wine grape	nucleus	33.93	37.5
VIT_12s0059g01460.t01	Wine grape	nucleus	41.67	34.31
VIT_12s0028g03270.t01	Wine grape	nucleus	39.88	31.75
VIT_10s0003g00140.t01	Wine grape	nucleus	39.29	29.07
VIT_19s0014g02240.t01	Wine grape	nucleus	37.5	28.64
VIT_19s0090g01080.t01	Wine grape	nucleus	41.67	27.13
VIT_14s0068g00860.t01	Wine grape	nucleus	32.74	21.15
VIT_00s0291g00030.t01	Wine grape	nucleus	31.55	12.8

Protein Annotations

EntrezGene:100240970	wikigene:100240970	MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
ProteinID:CCB44712	ProteinID:CCB44712.1	ncoils:Coil	InterPro:DNA-bd_dom_sf	UniProt:F6GXM6	EMBL:FN594965
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
EntrezGene:LOC100240970	wikigene:LOC100240970	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31677
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI00019837DB	ArrayExpress:VIT_07s0141g00690	EnsemblPlantsGene:VIT_07s0141g00690	EnsemblPlants:VIT_07s0141g00690.t01
unigene:Vvi.19319	RefSeq:XP_002282315	RefSeq:XP_002282315.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr7:-:385657..386466

Molecular Weight (calculated)

18557.0 Da

IEP (calculated)

10.150

GRAVY (calculated)

-0.623

Length

168 amino acids

Sequence
(BLAST)

001: MAVEPLNRRS QPSGSGGAVI KEVHFRGVRK RPWGRFAAEI RDPWKKTRKW LGTFDTAEEA ARAYDDAARS LRGPKAKTNF GDGGLSFASA EAPVAGASEL
101: FGKGLQQHWL QPSLTGGGDS VAVTTRSEYT GYRLDAVDLM VSEEEKKMRQ EKEKKPFLFD LNLPAPLF

Best Arabidopsis Sequence Match ( AT1G50640.1 )
(BLAST)

001: MRRGRGSSAV AGPTVVAAIN GSVKEIRFRG VRKRPWGRFA AEIRDPWKKA RVWLGTFDSA EEAARAYDSA ARNLRGPKAK TNFPIDSSSP PPPNLRFNQI
101: RNQNQNQVDP FMDHRLFTDH QQQFPIVNRP TSSSMSSTVE SFSGPRPTTM KPATTKRYPR TPPVVPEDCH SDCDSSSSVI DDDDDIASSS RRRNPPFQFD
201: LNFPPLDCVD LFNGADDLHC TDLRL

Arabidopsis Description

ERF3Uncharacterized protein At1g50640 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV01]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.