Factsheet for VIT_10s0003g00140.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32582	Soybean	nucleus	25.11	62.64
VIT_19s0014g02240.t01	Wine grape	nucleus	53.3	55.0
Solyc10g009110.1.1	Tomato	nucleus	53.74	54.95
VIT_12s0028g03270.t01	Wine grape	nucleus	50.66	54.5
PGSC0003DMT400058751	Potato	nucleus	53.3	53.54
PGSC0003DMT400068959	Potato	nucleus	50.22	50.89
Solyc07g053740.1.1	Tomato	nucleus	49.34	49.78
GSMUA_Achr9P11480_001	Banana	nucleus	47.58	47.79
VIT_10s0003g00130.t01	Wine grape	nucleus	27.75	41.45
CDX89866	Canola	nucleus	32.6	41.11
Bra015266.1-P	Field mustard	nucleus	32.6	40.44
CDY18185	Canola	nucleus	31.72	40.0
VIT_07s0141g00690.t01	Wine grape	nucleus	29.07	39.29
KRH45546	Soybean	nucleus	30.84	38.89
Solyc03g006320.1.1	Tomato	nucleus, plastid	36.56	38.43
PGSC0003DMT400035731	Potato	nucleus	48.02	36.7
PGSC0003DMT400033391	Potato	nucleus	36.56	36.09
VIT_12s0059g01460.t01	Wine grape	nucleus	32.16	35.78
VIT_14s0081g00520.t01	Wine grape	nucleus	25.99	34.5
VIT_19s0090g01080.t01	Wine grape	nucleus	32.6	28.68
VIT_14s0068g00860.t01	Wine grape	nucleus	23.79	20.77
VIT_00s0291g00030.t01	Wine grape	nucleus	25.99	14.25

Protein Annotations

EntrezGene:100248784	wikigene:100248784	MapMan:15.5.7.1	Gene3D:3.30.730.10	EMBL:AM444399	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	ProteinID:CAN74093	ProteinID:CAN74093.1	ProteinID:CBI30599	ProteinID:CBI30599.3	UniProt:D7TJC7
InterPro:DNA-bd_dom_sf	EMBL:FN595992	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	EntrezGene:LOC100248784	wikigene:LOC100248784	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31677	PANTHER:PTHR31677:SF42	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI00015CCCEE
ArrayExpress:VIT_10s0003g00140	EnsemblPlantsGene:VIT_10s0003g00140	EnsemblPlants:VIT_10s0003g00140.t01	RefSeq:XP_002279692	RefSeq:XP_002279692.1	SEG:seg

Description

No Description!

Coordinates

chr10:-:1442862..1444120

Molecular Weight (calculated)

24590.8 Da

IEP (calculated)

10.030

GRAVY (calculated)

-0.558

Length

227 amino acids

Sequence
(BLAST)

001: MAPKEKVAGV KPSANAKEVH FRGVRKRPWG RYAAEIRDPG KKSRVWLGTF DTAEEAAKAY DSAAREFRGA KAKTNFPLVS ENLNNNNQSP SQSSTVESSS
101: REGFSPALMV DSSPLDLNLL HGGGVGHHQF QVSSPSPAAG IVPTGGLPAA NHLFYFDAML RTGRVNQDFQ RLRFDRAASD FRAALTGGVQ SDSDSSSVVD
201: LNHNDLKPRA RVLIDLDLNR PPPPEIA

Best Arabidopsis Sequence Match ( AT3G15210.1 )
(BLAST)

001: MAKMGLKPDP ATTNQTHNNA KEIRYRGVRK RPWGRYAAEI RDPGKKTRVW LGTFDTAEEA ARAYDTAARD FRGAKAKTNF PTFLELSDQK VPTGFARSPS
101: QSSTLDCASP PTLVVPSATA GNVPPQLELS LGGGGGGSCY QIPMSRPVYF LDLMGIGNVG RGQPPPVTSA FRSPVVHVAT KMACGAQSDS DSSSVVDFEG
201: GMEKRSQLLD LDLNLPPPSE QA

Arabidopsis Description

ERF4Ethylene-responsive transcription factor 4 [Source:UniProtKB/Swiss-Prot;Acc:O80340]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.