Factsheet for GSMUA_AchrUn_randomP27230_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P13050_001
GSMUA_Achr2P13060_001
GSMUA_Achr4P28360_001
GSMUA_Achr4P31660_001
GSMUA_Achr5P02420_001
GSMUA_Achr7P01060_001
GSMUA_Achr8P02960_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12980.1	GSMUA_Achr2P13050_001	AT1G30490.1	17376809
AT1G12980.1	GSMUA_Achr2P13060_001	AT1G30490.1	17376809
AT1G12980.1	GSMUA_Achr4P28360_001	AT1G30490.1	17376809
AT1G12980.1	GSMUA_Achr4P31660_001	AT1G30490.1	17376809
AT1G12980.1	GSMUA_Achr5P02420_001	AT1G30490.1	17376809
AT1G12980.1	GSMUA_Achr7P01060_001	AT1G30490.1	17376809
AT1G12980.1	GSMUA_Achr8P02960_001	AT1G30490.1	17376809
AT1G12980.1	GSMUA_Achr2P13050_001	AT1G30490.1	18830673
AT1G12980.1	GSMUA_Achr2P13060_001	AT1G30490.1	18830673
AT1G12980.1	GSMUA_Achr4P28360_001	AT1G30490.1	18830673
AT1G12980.1	GSMUA_Achr4P31660_001	AT1G30490.1	18830673
AT1G12980.1	GSMUA_Achr5P02420_001	AT1G30490.1	18830673
AT1G12980.1	GSMUA_Achr7P01060_001	AT1G30490.1	18830673
AT1G12980.1	GSMUA_Achr8P02960_001	AT1G30490.1	18830673

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P01870_001	Banana	nucleus	60.71	59.03
GSMUA_Achr7P00350_001	Banana	nucleus	17.86	45.45
GSMUA_AchrUn_...	Banana	nucleus	16.79	43.52
GSMUA_Achr6P35320_001	Banana	nucleus	17.86	34.97
GSMUA_Achr3P19420_001	Banana	nucleus	33.21	32.75
GSMUA_Achr7P17910_001	Banana	nucleus	18.93	32.72
GSMUA_Achr3P13010_001	Banana	nucleus	17.86	32.68
PGSC0003DMT400011492	Potato	nucleus	27.86	30.71
PGSC0003DMT400008830	Potato	nucleus	27.86	30.71
HORVU6Hr1G053460.1	Barley	nucleus	19.29	30.51
GSMUA_Achr4P04060_001	Banana	mitochondrion	16.79	29.75
GSMUA_Achr1P25890_001	Banana	nucleus	16.79	29.56
GSMUA_Achr3P29290_001	Banana	nucleus	16.79	29.56
GSMUA_Achr7P03640_001	Banana	nucleus	17.5	29.52
GSMUA_Achr8P15820_001	Banana	nucleus	17.86	29.41
GSMUA_AchrUn_...	Banana	nucleus	18.57	29.38
GSMUA_Achr4P11430_001	Banana	nucleus	17.14	29.27
GSMUA_Achr1P18230_001	Banana	nucleus	19.29	28.42
GSMUA_Achr4P06170_001	Banana	nucleus	18.57	28.11
GSMUA_Achr6P01440_001	Banana	nucleus	18.57	27.96
Bra026942.1-P	Field mustard	nucleus	29.29	27.89
CDY26605	Canola	nucleus	29.29	27.89
GSMUA_Achr8P33590_001	Banana	nucleus	18.57	27.81
GSMUA_Achr5P26850_001	Banana	nucleus	18.93	27.75
CDY16048	Canola	nucleus	28.93	27.74
GSMUA_Achr8P06870_001	Banana	nucleus	17.86	27.03
GSMUA_Achr6P00240_001	Banana	nucleus	16.43	26.74
GSMUA_Achr8P15830_001	Banana	nucleus	18.93	26.63
KRH45585	Soybean	nucleus	33.57	26.55
KRG99434	Soybean	nucleus	33.21	26.27
GSMUA_Achr3P23710_001	Banana	nucleus	18.57	25.74
CDY19407	Canola	nucleus	28.93	25.63
PGSC0003DMT400047887	Potato	nucleus	35.0	25.13
AT1G12980.1	Thale cress	nucleus	29.29	25.0
VIT_00s0291g00030.t01	Wine grape	nucleus	36.79	24.88
Solyc05g013540.1.1	Tomato	nucleus	33.93	24.61
GSMUA_Achr9P11480_001	Banana	nucleus	19.64	24.34
KRH69639	Soybean	nucleus	33.93	24.3
GSMUA_Achr6P00250_001	Banana	nucleus	20.71	24.27
KRH74517	Soybean	nucleus	31.43	24.24
Bra019801.1-P	Field mustard	nucleus	27.86	24.0
GSMUA_Achr4P06660_001	Banana	nucleus	16.43	23.96
GSMUA_Achr10P...	Banana	nucleus	22.14	23.75
GSMUA_Achr4P23620_001	Banana	nucleus	18.57	23.21
Zm00001d050948_P001	Maize	nucleus	24.29	23.13
GSMUA_Achr8P03550_001	Banana	nucleus	17.5	22.69
GSMUA_Achr3P02360_001	Banana	nucleus	21.07	21.93
GSMUA_Achr8P30180_001	Banana	nucleus	24.29	21.79
GSMUA_Achr10P...	Banana	nucleus	17.14	21.62
EES05354	Sorghum	nucleus	23.93	21.61
GSMUA_Achr4P33270_001	Banana	nucleus	20.0	21.05
GSMUA_Achr5P09940_001	Banana	mitochondrion	17.86	21.01
TraesCS6B01G237700.1	Wheat	nucleus	21.07	19.8
TraesCS6D01G192200.1	Wheat	nucleus	21.07	19.8
TraesCS6A01G208700.1	Wheat	nucleus	21.07	19.73
Os02t0594300-00	Rice	nucleus	22.5	18.26
CDX98022	Canola	nucleus	8.57	12.12

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_AchrUn_randomG27230_001	EnsemblPlants:GSMUA_AchrUn_randomP27230_001	EnsemblPlants:GSMUA_AchrUn_randomT27230_001
InterPro:IPR001471	InterPro:IPR036955	UniProt:M0UCT1	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31677	PANTHER:PTHR31677:SF9	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000295AC4D	SEG:seg

Description

Putative AP2 domain containing protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG27230_001]

Coordinates

chrchrUn_random:+:133263886..133264911

Molecular Weight (calculated)

32030.5 Da

IEP (calculated)

7.747

GRAVY (calculated)

-0.725

Length

280 amino acids

Sequence
(BLAST)

001: MEEDSNSSHQ YIRKCSTISG SSNNNNRNKR ATASKDGTRY RGVRRRPWGR YAAEIRDPQS KERRWLGTFD TAEQAACAYD IAARAMRGLK ARTNFHYPLT
101: AAVQPPAAPV ATVDHFLLHP SEWTWNNVPH MHISPPVSHH RHFSLDPLLL RNLINHSSSL HHHPPNTSAS SVTEVPTRFA EHCDFFRTEP PESGLLQEIV
201: NGFYRRRSID TDYTLKDSRS QCDTKDAVDL LNYHIQMPLK QEEKMFDSAD DLPMITQGLL EDIVHCPDFF DMLSAKLHKA

Best Arabidopsis Sequence Match ( AT1G24590.1 )
(BLAST)

001: MEEAIMRLEG AEHRETNIHS LKRKPSRTSS TAPGSPGGVT TAKAASGAGA SGVSTIRYRG VRRRPWGRYA AEIRDPLSKE RRWLGTFDTA EEAACAYDCA
101: ARAMRGLKAR TNFVYPMPSL DSYHHRIFSS PPMNMFLLRD VLNSQSLSPL TTFAYPPCNL SNVNDVVHES FTNVNDVCED LSPKAKRSST IENESLISNI
201: FEPEPASSGL LQEIVQGFLP KPISQHASIP PKSNQQSVGV FPTMPESGFQ TDVRLADFHV EGNGFGQVKY HGELGWADHE NGFDSAKMQQ NGNGGMFYQY
301: CFHDDY

Arabidopsis Description

ESR2Ethylene-responsive transcription factor ESR2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYK5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.