Factsheet for GSMUA_Achr5P02420_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr1P17670_001
GSMUA_Achr3P19420_001
GSMUA_Achr5P12010_001
GSMUA_Achr8P12100_001
GSMUA_Achr9P01870_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30490.1	GSMUA_Achr3P19420_001	AT1G12980.1	17376809
AT1G30490.1	GSMUA_Achr9P01870_001	AT1G12980.1	17376809
AT1G30490.1	GSMUA_AchrUn_...	AT1G12980.1	17376809
AT1G30490.1	GSMUA_Achr3P19420_001	AT1G12980.1	18830673
AT1G30490.1	GSMUA_Achr9P01870_001	AT1G12980.1	18830673
AT1G30490.1	GSMUA_AchrUn_...	AT1G12980.1	18830673
AT1G30490.1	GSMUA_Achr1P17670_001	AT3G45610.1	21245844
AT1G30490.1	GSMUA_Achr5P12010_001	AT3G45610.1	21245844
AT2G34710.1	GSMUA_Achr11P...	AT2G18060.1	21245844
AT2G34710.1	GSMUA_Achr8P12100_001	AT2G18060.1	21245844
AT2G34710.1	GSMUA_Achr1P17670_001	AT3G45610.1	21245844
AT2G34710.1	GSMUA_Achr5P12010_001	AT3G45610.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P31660_001	Banana	cytosol	85.58	87.08
GSMUA_Achr2P13060_001	Banana	cytosol	8.35	86.9
GSMUA_Achr2P13050_001	Banana	cytosol	76.89	86.04
GSMUA_Achr7P01060_001	Banana	cytosol	82.49	83.93
Os03t0640800-01	Rice	plastid	81.46	82.89
EER91178	Sorghum	nucleus	80.21	82.08
Zm00001d013699_P001	Maize	cytosol	80.21	81.89
GSMUA_Achr4P28360_001	Banana	cytosol	84.32	81.89
Zm00001d033246_P004	Maize	cytosol	80.09	81.78
TraesCS5B01G378000.1	Wheat	cytosol, nucleus, plastid	80.21	81.32
TraesCS5D01G385300.1	Wheat	cytosol, nucleus, plastid	80.21	81.32
TraesCS5A01G375800.1	Wheat	cytosol, nucleus, plastid	80.21	81.32
VIT_10s0003g04670.t01	Wine grape	cytosol, nucleus, plastid	78.03	80.71
Os12t0612700-01	Rice	nucleus	77.46	79.18
GSMUA_Achr8P02960_001	Banana	cytosol	75.4	78.55
PGSC0003DMT400030829	Potato	cytosol, nucleus, plastid	76.2	78.17
KRH11775	Soybean	cytosol, nucleus, plastid	75.29	77.78
KRH36781	Soybean	cytosol, nucleus, plastid	75.74	77.7
TraesCS5A01G043400.1	Wheat	cytosol, nucleus, plastid	74.26	76.71
Solyc02g024070.2.1	Tomato	cytosol, nucleus, plastid	74.37	76.38
KRH43001	Soybean	cytosol	73.34	75.5
PGSC0003DMT400054421	Potato	cytosol, nucleus, plastid	71.85	75.21
EES17386	Sorghum	mitochondrion	73.57	75.03
KRH59117	Soybean	cytosol	72.77	74.56
Solyc02g069830.2.1	Tomato	nucleus	71.74	74.47
CDY43661	Canola	cytosol	68.76	73.92
TraesCS5D01G052300.1	Wheat	mitochondrion, plastid	74.37	73.61
HORVU5Hr1G010650.1	Barley	cytosol	71.97	73.31
TraesCS5B01G047200.1	Wheat	extracellular, mitochondrion, nucleus, plastid	73.68	73.27
CDY31635	Canola	nucleus	71.05	73.14
HORVU0Hr1G010250.3	Barley	cytosol	62.24	73.02
AT2G34710.1	Thale cress	cytosol	71.05	72.89
Bra005398.1-P	Field mustard	cytosol	70.71	72.79
Zm00001d041489_P009	Maize	cytosol, nucleus, plastid	71.74	72.49
CDX84286	Canola	cytosol	70.37	72.44
Bra021926.1-P	Field mustard	cytosol	69.79	72.36
AT1G30490.1	Thale cress	nucleus	69.34	72.06
CDY09572	Canola	cytosol, nucleus, plastid	68.99	71.79
CDY02297	Canola	nucleus	68.99	71.79
Bra032394.1-P	Field mustard	cytosol, nucleus, plastid	68.99	71.79
GSMUA_Achr5P18530_001	Banana	cytosol, nucleus, plastid	66.48	69.66
HORVU5Hr1G093150.2	Barley	cytosol, plastid	79.75	69.49
Zm00001d031061_P007	Maize	mitochondrion	70.37	68.79
GSMUA_Achr8P20090_001	Banana	cytosol	63.62	66.35
GSMUA_Achr5P06550_001	Banana	cytosol	63.27	65.91
Zm00001d018824_P001	Maize	cytosol	8.81	56.2
CDX71242	Canola	peroxisome	5.03	52.38
Solyc01g057960.1.1	Tomato	plastid	6.86	43.48
AT5G32670.1	Thale cress	cytosol, plastid	9.15	41.67
CDY53980	Canola	cytosol, nucleus, peroxisome	7.32	41.29

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.2	MapMan:15.5.3.3	Gene3D:3.30.530.20	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0008289	EnsemblPlantsGene:GSMUA_Achr5G02420_001	EnsemblPlants:GSMUA_Achr5P02420_001	EnsemblPlants:GSMUA_Achr5T02420_001	InterPro:Homeobox-like_sf
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	UniProt:M0SV21	InterPro:MEKHLA
PFAM:PF00046	PFAM:PF01852	PFAM:PF08670	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326
PANTHER:PTHR24326:SF494	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf
InterPro:START_lipid-bd_dom	UniParc:UPI000296A072	SEG:seg	:	:	:

Description

Homeobox-leucine zipper protein HOX32 [Source:GMGC_GENE;Acc:GSMUA_Achr5G02420_001]

Coordinates

chr5:-:1524821..1531289

Molecular Weight (calculated)

95284.1 Da

IEP (calculated)

6.540

GRAVY (calculated)

-0.085

Length

874 amino acids

Sequence
(BLAST)

001: MAMVVSGKEA GKGQQAAAAG MDAGKYVRYT PEQVEALERV YTECPKPSSL RRQQLIRECP ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QTVNRKLTAM
101: NKLLMEENDR LQKQVSQLVY ENGYMRQQLH NVSVHVARFL KYACFHVIHS YAPVATNDTS CESVVTSGQH HHQQNPTPQR PQKDANNPAG LLAIAEETLA
201: EFLSKATGTA VDWVQMVGMK PGPDSIGIIA VSHNCSGVAA RACGLVSLEP TKVADILKDR PSWYCDCRCL EVLTVIPTGN GGNIELIYMQ TYAPTTLAAA
301: RDFWTLRYTT GLEDGSLVIC ERSLTPVTGG PAGPPAPNFV RAEMLSSGYL IRPCEGGGSM IHIVDHVDLD AWSVPEVLRP LYESPKILAQ KMTVAALRHL
401: KQIAQETSGE VPYGSGRRPA VLRTFSQRLS RGFNDAVNGF VDDGWSLLGS DGVEDVTVAI NSSPNKILSS HANTSAVFST LGGGVLCAKA SMLLQNVPPA
501: ILVQFLREHR SEWADCGVDA YSAASLTANP YAVPAVRASG GFLGSQVILP LAHTVEHEEF LEVIRLEGHG FNQDDVILSR DMYFLQLCSG VDENAVGACA
601: QLVFAPIDES FADDVPLLPS GFRVTPLDPK TDSPAATRTL DLASTLEIGS GVTARAVNET ASSTYNLRSV LTIAFQFTYE NHLRDSVAEM ARQYVRNVVA
701: SVQRVAMAIA PSRPGSQIGV KHPPGSPEAH TLAQWISGSY RAHTGGDLLR VDSQASDLLL KLLWHHSDAI MCCSLKASPV LTFSNQAGLD MLETTLIALQ
801: DIALEKILDD SARKVLCSEF PKIMQQGLAY LPAGICLSSM GRPVSYEQAV AWKVLNEEDT THCLAFMFVN WSFV

Best Arabidopsis Sequence Match ( AT2G34710.1 )
(BLAST)

001: MMMVHSMSRD MMNRESPDKG LDSGKYVRYT PEQVEALERV YTECPKPSSL RRQQLIRECP ILSNIEPKQI KVWFQNRRCR EKQRKEAARL QTVNRKLNAM
101: NKLLMEENDR LQKQVSNLVY ENGHMKHQLH TASGTTTDNS CESVVVSGQQ HQQQNPNPQH QQRDANNPAG LLSIAEEALA EFLSKATGTA VDWVQMIGMK
201: PGPDSIGIVA ISRNCSGIAA RACGLVSLEP MKVAEILKDR PSWLRDCRSV DTLSVIPAGN GGTIELIYTQ MYAPTTLAAA RDFWTLRYST CLEDGSYVVC
301: ERSLTSATGG PTGPPSSNFV RAEMKPSGFL IRPCDGGGSI LHIVDHVDLD AWSVPEVMRP LYESSKILAQ KMTVAALRHV RQIAQETSGE VQYGGGRQPA
401: VLRTFSQRLC RGFNDAVNGF VDDGWSPMGS DGAEDVTVMI NLSPGKFGGS QYGNSFLPSF GSGVLCAKAS MLLQNVPPAV LVRFLREHRS EWADYGVDAY
501: AAASLRASPF AVPCARAGGF PSNQVILPLA QTVEHEESLE VVRLEGHAYS PEDMGLARDM YLLQLCSGVD ENVVGGCAQL VFAPIDESFA DDAPLLPSGF
601: RIIPLEQKST PNGASANRTL DLASALEGST RQAGEADPNG CNFRSVLTIA FQFTFDNHSR DSVASMARQY VRSIVGSIQR VALAIAPRPG SNISPISVPT
701: SPEALTLVRW ISRSYSLHTG ADLFGSDSQT SGDTLLHQLW NHSDAILCCS LKTNASPVFT FANQTGLDML ETTLVALQDI MLDKTLDEPG RKALCSEFPK
801: IMQQGYAHLP AGVCASSMGR MVSYEQATVW KVLEDDESNH CLAFMFVNWS FV

Arabidopsis Description

ATHB-14Homeobox-leucine zipper protein ATHB-14 [Source:UniProtKB/Swiss-Prot;Acc:O04291]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.