Factsheet for GSMUA_Achr8P12100_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 25523085

gfp PMID: 25523085 doi

S Negi, H Tak, TR Ganapathi

Plant Cell Culture Technology Section, Nuclear Agriculture and Biotechnology Division, Bhabha Atomic Research Centre, Trombay, Mumbai, India.

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P13050_001
GSMUA_Achr2P13060_001
GSMUA_Achr4P28360_001
GSMUA_Achr4P31660_001
GSMUA_Achr5P02420_001
GSMUA_Achr5P18530_001
GSMUA_Achr7P01060_001
GSMUA_Achr8P02960_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18060.1	GSMUA_Achr2P13050_001	AT1G30490.1	21245844
AT2G18060.1	GSMUA_Achr2P13060_001	AT1G30490.1	21245844
AT2G18060.1	GSMUA_Achr4P28360_001	AT1G30490.1	21245844
AT2G18060.1	GSMUA_Achr4P31660_001	AT1G30490.1	21245844
AT2G18060.1	GSMUA_Achr5P02420_001	AT1G30490.1	21245844
AT2G18060.1	GSMUA_Achr7P01060_001	AT1G30490.1	21245844
AT2G18060.1	GSMUA_Achr8P02960_001	AT1G30490.1	21245844
AT2G18060.1	GSMUA_Achr2P13050_001	AT2G34710.1	21245844
AT2G18060.1	GSMUA_Achr2P13060_001	AT2G34710.1	21245844
AT2G18060.1	GSMUA_Achr4P28360_001	AT2G34710.1	21245844
AT2G18060.1	GSMUA_Achr4P31660_001	AT2G34710.1	21245844
AT2G18060.1	GSMUA_Achr5P02420_001	AT2G34710.1	21245844
AT2G18060.1	GSMUA_Achr7P01060_001	AT2G34710.1	21245844
AT2G18060.1	GSMUA_Achr8P02960_001	AT2G34710.1	21245844
AT2G18060.1	GSMUA_Achr5P18530_001	AT5G60690.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048456_P001	Maize	nucleus	37.95	86.3
CDX69209	Canola	cytosol, mitochondrion, nucleus	37.35	77.99
GSMUA_Achr11P...	Banana	nucleus	78.01	77.54
VIT_04s0023g03110.t01	Wine grape	nucleus	65.96	65.37
Bra039915.1-P	Field mustard	nucleus	52.11	64.07
KRH76680	Soybean	nucleus	62.35	60.17
PGSC0003DMT400009136	Potato	nucleus	61.75	59.08
Solyc02g084350.2.1	Tomato	nucleus	62.05	59.03
CDY47055	Canola	nucleus	55.42	56.27
KRH28776	Soybean	endoplasmic reticulum, golgi, mitochondrion	63.25	55.26
AT2G18060.1	Thale cress	nucleus	60.24	54.79
EER94595	Sorghum	cytosol, mitochondrion, nucleus	54.52	54.35
CDY38177	Canola	nucleus	59.04	54.29
CDX72580	Canola	nucleus	55.12	53.98
Os10t0532000-01	Rice	cytosol	55.42	53.96
OQU93335	Sorghum	cytosol, mitochondrion, nucleus	60.24	53.91
CDX69208	Canola	nucleus	55.42	53.64
Bra017750.1-P	Field mustard	nucleus	59.34	53.24
Bra011667.1-P	Field mustard	nucleus	59.04	52.83
CDX75558	Canola	nucleus	54.52	52.77
AT4G36160.2	Thale cress	nucleus	59.94	52.23
HORVU4Hr1G083050.3	Barley	cytosol, mitochondrion, nucleus	57.83	52.17
TraesCS5A01G491700.1	Wheat	cytosol, mitochondrion, nucleus	57.53	52.04
TraesCS4D01G316800.1	Wheat	nucleus	57.53	52.04
TraesCS4B01G320300.1	Wheat	cytosol, mitochondrion, nucleus	56.93	51.5
Zm00001d027459_P001	Maize	nucleus	56.63	49.6
GSMUA_Achr11P...	Banana	nucleus	47.29	49.53
GSMUA_Achr8P11590_001	Banana	cytosol	46.39	48.43
GSMUA_Achr6P18860_001	Banana	cytosol, nucleus, plastid	37.35	48.25
GSMUA_Achr11P...	Banana	nucleus	50.3	47.44
GSMUA_Achr3P22360_001	Banana	nucleus	42.77	47.02
GSMUA_Achr7P06640_001	Banana	nucleus	46.39	45.29
GSMUA_Achr2P20020_001	Banana	cytosol, nucleus, plastid	38.55	45.07
GSMUA_Achr7P23170_001	Banana	nucleus	33.43	44.58
GSMUA_AchrUn_...	Banana	nucleus	34.04	44.31
GSMUA_Achr10P...	Banana	nucleus	38.86	41.61
GSMUA_Achr10P...	Banana	nucleus	35.84	41.32
GSMUA_Achr6P36840_001	Banana	nucleus	45.78	41.19
GSMUA_Achr3P03500_001	Banana	nucleus	26.2	40.09
GSMUA_Achr3P12230_001	Banana	nucleus	40.36	39.53
GSMUA_Achr6P28890_001	Banana	nucleus	35.84	37.3
GSMUA_Achr7P05980_001	Banana	nucleus	38.25	36.49
GSMUA_Achr9P24450_001	Banana	nucleus	38.25	36.18
GSMUA_Achr2P05640_001	Banana	cytosol, nucleus, plastid	33.13	34.38

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr8G12100_001
EnsemblPlants:GSMUA_Achr8P12100_001	EnsemblPlants:GSMUA_Achr8T12100_001	InterPro:IPR003441	InterPro:IPR036093	UniProt:M0TPR3	InterPro:NAC-dom
InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31989	PANTHER:PTHR31989:SF107	SUPFAM:SSF101941
UniParc:UPI0002958966	SEG:seg	:	:	:	:

Description

NAC domain-containing protein 7 [Source:GMGC_GENE;Acc:GSMUA_Achr8G12100_001]

Coordinates

chr8:+:8830351..8831907

Molecular Weight (calculated)

38168.2 Da

IEP (calculated)

5.688

GRAVY (calculated)

-0.670

Length

332 amino acids

Sequence
(BLAST)

001: MESCVPPGFR FHPTDEELVG YYLKKKVASQ KIDLDVIRDI DLYRIEPWDL QERCRIGYEE QSEWYFFSHK DKKYPTGTRT NRATMAGFWK ATGRDKAVHD
101: KNKLIGMRKT LVFYKGRAPN GQKTDWIMHE NEKKRKETNV ISHSQEEGWV VCRAFKKRAT CPARSVAAIW NSGYCYDELD RMNSMVNPMM CLQKQPMSLQ
201: CKQETEFEEL HLLHPSQFVQ LPQLESPSLP LVSQPSSKMT VLEKEDEQQQ QQAGMSSGMG SVTDWRALDK FVASQLSHEG GSFVSEQVVS DFGVDNDSEM
301: ALLLLQSERE GFNEFIGSGE PDCDKGICIF EQ

Best Arabidopsis Sequence Match ( AT2G18060.1 )
(BLAST)

001: MEPMESCSVP PGFRFHPTDE ELVGYYLRKK IASQKIDLDV IRDIDLYRIE PWDLQEQCRI GYEEQNEWYF FSHKDKKYPT GTRTNRATMA GFWKATGRDK
101: AVYDKTKLIG MRKTLVFYKG RAPNGKKSDW IMHEYRLESD ENAPPQEEGW VVCRAFKKRA TGQAKNTETW SSSYFYDEVA PNGVNSVMDP IDYISKQQHN
201: IFGKGLMCKQ ELEGMVDGIN YIQSNQFIQL PQLQSPSLPL MKRPSSSMSI TSMDNNYNYK LPLADEESFE SFIRGEDRRK KKKQVMMTGN WRELDKFVAS
301: QLMSQEDNGT SSFAGHHIVN EDKNNNDVEM DSSMFLSERE EENRFVSEFL STNSDYDIGI CVFDN

Arabidopsis Description

NAC037VND1 [Source:UniProtKB/TrEMBL;Acc:A0A178VM15]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.