Factsheet for GSMUA_Achr6P36840_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr6P36840_001
GSMUA_Achr7P06640_001
GSMUA_Achr8P11590_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62380.1	GSMUA_Achr11P...	AT5G62380.1	18445131
AT5G62380.1	GSMUA_Achr11P...	AT5G62380.1	18445131
AT5G62380.1	GSMUA_Achr6P36840_001	AT5G62380.1	18445131
AT5G62380.1	GSMUA_Achr7P06640_001	AT5G62380.1	18445131
AT5G62380.1	GSMUA_Achr8P11590_001	AT5G62380.1	18445131

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055552	Potato	cytosol, nucleus, peroxisome	31.98	79.73
GSMUA_Achr7P06640_001	Banana	nucleus	67.48	73.24
Zm00001d045600_P001	Maize	nucleus	26.83	71.22
KRH39986	Soybean	nucleus	56.64	59.04
KRH23801	Soybean	nucleus	54.74	58.21
GSMUA_Achr8P11590_001	Banana	cytosol	49.32	57.23
VIT_16s0022g00690.t01	Wine grape	cytosol, nucleus, peroxisome	55.56	57.1
KRH62610	Soybean	nucleus	52.57	56.89
GSMUA_Achr11P...	Banana	nucleus	54.2	56.82
TraesCS7D01G008500.1	Wheat	nucleus	51.49	56.55
TraesCS4A01G486200.1	Wheat	nucleus	51.49	56.55
TraesCS7A01G008800.1	Wheat	nucleus	51.49	56.55
OQU75680	Sorghum	nucleus	51.76	56.34
GSMUA_Achr11P...	Banana	nucleus	48.24	56.15
KRH56355	Soybean	nucleus	53.93	54.82
Solyc06g034340.1.1	Tomato	nucleus	50.14	54.41
Solyc03g083880.2.1	Tomato	nucleus	45.26	53.53
HORVU7Hr1G000140.6	Barley	nucleus	49.32	52.15
Os06t0104200-01	Rice	nucleus	50.95	51.65
CDY00280	Canola	nucleus	34.96	49.62
GSMUA_Achr6P18860_001	Banana	cytosol, nucleus, plastid	34.42	49.42
GSMUA_AchrUn_...	Banana	nucleus	32.79	47.45
GSMUA_Achr7P23170_001	Banana	nucleus	31.44	46.59
GSMUA_Achr8P12100_001	Banana	nucleus	41.19	45.78
GSMUA_Achr3P22360_001	Banana	nucleus	36.31	44.37
GSMUA_Achr11P...	Banana	nucleus	40.11	44.31
Bra010077.1-P	Field mustard	nucleus	41.46	44.09
GSMUA_Achr2P20020_001	Banana	cytosol, nucleus, plastid	33.88	44.01
CDY16776	Canola	nucleus	39.57	43.98
Bra035896.1-P	Field mustard	nucleus	39.3	43.67
CDX87246	Canola	nucleus	39.57	43.45
CDY58006	Canola	nucleus	40.65	43.1
AT5G62380.1	Thale cress	nucleus	40.38	42.82
CDY30716	Canola	nucleus	41.46	42.38
Bra029266.1-P	Field mustard	nucleus	41.19	41.76
GSMUA_Achr3P03500_001	Banana	nucleus	24.39	41.47
GSMUA_Achr10P...	Banana	nucleus	32.25	41.32
GSMUA_Achr3P12230_001	Banana	nucleus	37.13	40.41
GSMUA_Achr10P...	Banana	nucleus	33.88	40.32
GSMUA_Achr7P05980_001	Banana	nucleus	36.31	38.51
GSMUA_Achr9P24450_001	Banana	nucleus	35.77	37.61
GSMUA_Achr6P28890_001	Banana	nucleus	32.25	37.3
GSMUA_Achr2P05640_001	Banana	cytosol, nucleus, plastid	31.44	36.25
Bra029264.1-P	Field mustard	nucleus	28.46	34.54
CDY00281	Canola	cytosol	5.15	28.36

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr6G36840_001
EnsemblPlants:GSMUA_Achr6P36840_001	EnsemblPlants:GSMUA_Achr6T36840_001	InterPro:IPR003441	InterPro:IPR036093	UniProt:M0TDC4	InterPro:NAC-dom
InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31989	PANTHER:PTHR31989:SF3	SUPFAM:SSF101941
UniParc:UPI000294ED81	SEG:seg	:	:	:	:

Description

Putative NAC domain-containing protein 7 [Source:GMGC_GENE;Acc:GSMUA_Achr6G36840_001]

Coordinates

chr6:-:34759892..34761188

Molecular Weight (calculated)

42680.2 Da

IEP (calculated)

6.729

GRAVY (calculated)

-0.690

Length

369 amino acids

Sequence
(BLAST)

001: MNDDISCVPP GFRFHPTDEE LVGYYLRKKV AARKIDLDVI KDVDLYKIEP WDLEEICKIG AEEQTEWHFF SHKDKKYPTG TRTNRATAAG FWKATGRDKP
101: IYSVRRLIGM RKTLVYYKGR APNGQKSDWI MHEYRLETNE DGTPQASISF LCFAISHGKD FKFQHTLPHD HIISSDFISQ EEGWVVCRAF KKRVPTARKA
201: SDELLPWYDE QASFMQDIYS PKRTIPQADI GYHHQLYPHK RDIKLHHHSP HEACHQLPPL ESPKFLNYLN HESSLQRCII SENEALQPGH RFGEITTCND
301: NENTSRASDQ MTDWRVLDKF VASQLSHDVS REPIYSDEAN ILQAPVEQQV VGVELPLASA SSCQIDPWK

Best Arabidopsis Sequence Match ( AT1G12260.1 )
(BLAST)

001: MNSFSHVPPG FRFHPTDEEL VDYYLRKKVA SKRIEIDFIK DIDLYKIEPW DLQELCKIGH EEQSDWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI
101: YLRHSLIGMR KTLVFYKGRA PNGQKSDWIM HEYRLETDEN GTPQEEGWVV CRVFKKRLAA VRRMGDYDSS PSHWYDDQLS FMASELETNG QRRILPNHHQ
201: QQQHEHQQHM PYGLNASAYA LNNPNLQCKQ ELELHYNHLV QRNHLLDESH LSFLQLPQLE SPKIQQDNSN CNSLPYGTSN IDNNSSHNAN LQQSNIAHEE
301: QLNQGNQNFS SLYMNSGNEQ VMDQVTDWRV LDKFVASQLS NEEAATASAS IQNNAKDTSN AEYQVDEEKD PKRASDMGEE YTASTSSSCQ IDLWK

Arabidopsis Description

NAC007NAC domain-containing protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWX2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.