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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 2
  • mitochondrion 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus, peroxisome
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:peroxisome
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS2A01G386300.1
TraesCS2B01G403300.1
TraesCS2D01G382800.1
TraesCS4A01G486200.1
TraesCS6A01G237900.1
TraesCS6B01G286200.1
TraesCS6D01G220600.1
TraesCS7A01G008800.1
TraesCS7D01G008500.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G62380.1 TraesCS2A01G386300.1 AT5G62380.1 18445131
AT5G62380.1 TraesCS2B01G403300.1 AT5G62380.1 18445131
AT5G62380.1 TraesCS2D01G382800.1 AT5G62380.1 18445131
AT5G62380.1 TraesCS4A01G486200.1 AT5G62380.1 18445131
AT5G62380.1 TraesCS6A01G237900.1 AT5G62380.1 18445131
AT5G62380.1 TraesCS6B01G286200.1 AT5G62380.1 18445131
AT5G62380.1 TraesCS6D01G220600.1 AT5G62380.1 18445131
AT5G62380.1 TraesCS7A01G008800.1 AT5G62380.1 18445131
AT5G62380.1 TraesCS7D01G008500.1 AT5G62380.1 18445131
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS7D01G008500.1 Wheat nucleus 99.4 99.4
TraesCS7A01G008800.1 Wheat nucleus 98.21 98.21
HORVU7Hr1G000140.6 Barley nucleus 91.96 88.54
OQU75680 Sorghum nucleus 86.01 85.25
PGSC0003DMT400055552 Potato cytosol, nucleus, peroxisome 37.2 84.46
Zm00001d045600_P001 Maize nucleus 32.44 78.42
Os06t0104200-01 Rice nucleus 67.26 62.09
GSMUA_Achr7P06640_001 Banana nucleus 61.61 60.88
KRH23801 Soybean nucleus 61.01 59.08
KRH39986 Soybean nucleus 60.71 57.63
VIT_16s0022g00690.t01 Wine grape cytosol, nucleus, peroxisome 60.71 56.82
KRH62610 Soybean nucleus 57.44 56.6
TraesCS7A01G068200.1 Wheat cytosol, nucleus, plastid 33.33 56.28
Solyc03g083880.2.1 Tomato nucleus 51.19 55.13
Solyc06g034340.1.1 Tomato nucleus 55.65 55.0
TraesCS6A01G237900.1 Wheat nucleus 57.44 54.83
KRH56355 Soybean nucleus 58.63 54.27
TraesCS2A01G386300.1 Wheat cytosol, nucleus, peroxisome 53.87 53.39
CDY00280 Canola nucleus 40.48 52.31
GSMUA_Achr6P36840_001 Banana nucleus 56.55 51.49
TraesCS2A01G565900.1 Wheat cytosol, nucleus, plastid 29.17 48.51
CDY16776 Canola nucleus 46.43 46.99
Bra035896.1-P Field mustard nucleus 46.13 46.69
AT5G62380.1 Thale cress nucleus 47.92 46.26
CDY58006 Canola nucleus 47.62 45.98
CDX87246 Canola nucleus 45.83 45.83
Bra010077.1-P Field mustard nucleus 47.32 45.82
CDY30716 Canola nucleus 47.32 44.04
TraesCS2A01G566400.1 Wheat nucleus 36.61 43.93
Bra029266.1-P Field mustard nucleus 47.02 43.41
TraesCS2A01G566000.1 Wheat nucleus 38.39 43.29
TraesCS2A01G566200.1 Wheat nucleus 37.8 41.64
TraesCS5A01G491700.1 Wheat cytosol, mitochondrion, nucleus 45.24 41.42
TraesCS2A01G566100.1 Wheat nucleus 38.69 40.75
TraesCS2A01G566300.1 Wheat nucleus 37.2 38.58
TraesCS7A01G326000.1 Wheat nucleus 35.71 38.46
TraesCS7A01G349500.1 Wheat nucleus 41.07 37.5
Bra029264.1-P Field mustard nucleus 33.33 36.84
TraesCS2A01G311500.1 Wheat nucleus 35.71 35.71
TraesCS7A01G317100.1 Wheat nucleus 43.15 35.37
TraesCS4A01G421200.1 Wheat nucleus 41.07 34.07
TraesCS7A01G068300.1 Wheat cytosol, nucleus, plastid 40.18 33.92
TraesCS4A01G421100.1 Wheat nucleus 39.88 33.58
TraesCS4A01G420000.1 Wheat cytosol, nucleus, plastid 38.99 33.25
TraesCS4A01G420900.1 Wheat cytosol, nucleus, plastid 39.58 33.17
TraesCS4A01G420200.1 Wheat nucleus 40.18 33.09
TraesCS7A01G068000.1 Wheat cytosol, nucleus, plastid 40.18 32.85
TraesCS4A01G420100.1 Wheat nucleus 39.58 32.44
TraesCS4A01G421300.1 Wheat cytosol, nucleus, plastid 39.88 32.29
TraesCS4A01G419900.1 Wheat nucleus 37.2 32.13
TraesCS4A01G421000.1 Wheat nucleus 38.99 31.87
CDY00281 Canola cytosol 5.36 26.87
Protein Annotations
MapMan:15.5.17Gene3D:3.30.310.150GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488
GO:GO:0006139GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
InterPro:IPR003441InterPro:IPR036093InterPro:NAC-domInterPro:NAC_dom_sfPFAM:PF02365PFscan:PS51005
PANTHER:PTHR31989PANTHER:PTHR31989:SF105SUPFAM:SSF101941EnsemblPlantsGene:TraesCS4A01G486200EnsemblPlants:TraesCS4A01G486200.1SEG:seg
Description
No Description!
Coordinates
chr4A:+:739586879..739588161
Molecular Weight (calculated)
39027.7 Da
IEP (calculated)
6.743
GRAVY (calculated)
-0.873
Length
336 amino acids
Sequence
(BLAST)
001: MGSNTQPQVP PGFRFHPTDE ELVDYYLRKK VASRRIDLNV IKDVDLYKIE PWDLQEKCRI GPEEEQSDWY FFSHKDKKYP TGTRTNRATA AGFWKATGRD
101: KPIYAKHCLV GMRKTLVYYK GRAPNGQKSD WIMHEYRLET NENGPPQEEG WVVCRVFKKR LPTTRRDLDH DAPCWYVDDD GPFMHDLNSP MRGMPPHHSM
201: ALQEQHLQML NSTYKRELKL QYQMPNHHHV LNTIPHELES PSSFHSLLVS PDDHQINVHH AQHHHVQLID HAVDDQAATD WRVLDKFVAS QLSNDAAKGV
301: DYAHEGDILQ LNEKAQELVT DYASTSTSSS QVDPWK
Best Arabidopsis Sequence Match ( AT1G12260.2 )
(BLAST)
001: MNSFSHVPPG FRFHPTDEEL VDYYLRKKVA SKRIEIDFIK DIDLYKIEPW DLQELCKIGH EEQSDWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI
101: YLRHSLIGMR KTLVFYKGRA PNGQKSDWIM HEYRLETDEN GTPQEEGWVV CRVFKKRLAA VRRMGDYDSS PSHWYDDQLS FMASELETNG QRRILPNHHQ
201: QQQHEHQQHM PYGLNASAYA LNNPNLQCKQ ELELHYNHLQ SNIAHEEQLN QGNQNFSSLY MNSGNEQVMD QVTDWRVLDK FVASQLSNEE AATASASIQN
301: NAKDTSNAEY QVDEEKDPKR ASDMGEEYTA STSSSCQIDL WK
Arabidopsis Description
NAC007NAC domain-containing protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWX2]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.