Factsheet for VIT_16s0022g00690.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_16s0022g00690.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62380.1	VIT_16s0022g00690.t01	AT5G62380.1	18445131

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055552	Potato	cytosol, nucleus, peroxisome	36.77	89.19
Os04t0536500-01	Rice	cytosol	35.1	77.78
VIT_02s0154g00020.t01	Wine grape	nucleus	74.65	75.07
Zm00001d051294_P001	Maize	cytosol	36.49	74.86
Zm00001d045600_P001	Maize	nucleus	27.86	71.94
KRH62610	Soybean	nucleus	66.85	70.38
Solyc06g034340.1.1	Tomato	nucleus	64.62	68.24
KRH56355	Soybean	nucleus	68.8	68.04
GSMUA_Achr11P...	Banana	nucleus	57.66	65.3
GSMUA_Achr7P06640_001	Banana	nucleus	61.28	64.71
GSMUA_Achr11P...	Banana	nucleus	62.95	64.2
GSMUA_Achr8P11590_001	Banana	cytosol	55.71	62.89
TraesCS4A01G486200.1	Wheat	nucleus	56.82	60.71
TraesCS7D01G008500.1	Wheat	nucleus	56.55	60.42
TraesCS7A01G008800.1	Wheat	nucleus	56.55	60.42
KXG31125	Sorghum	nucleus	57.38	59.37
OQU82026	Sorghum	nucleus	55.71	58.82
TraesCS2B01G403300.1	Wheat	cytosol, nucleus, peroxisome	55.15	58.41
TraesCS2A01G386300.1	Wheat	cytosol, nucleus, peroxisome	55.15	58.41
OQU75680	Sorghum	nucleus	55.15	58.41
HORVU2Hr1G092030.2	Barley	cytosol, nucleus, peroxisome	54.87	58.11
TraesCS6A01G237900.1	Wheat	nucleus	56.27	57.39
TraesCS6D01G220600.1	Wheat	nucleus	56.27	57.39
Zm00001d002828_P001	Maize	cytosol	54.87	57.27
HORVU6Hr1G060800.3	Barley	nucleus	56.55	57.02
TraesCS2D01G382800.1	Wheat	cytosol, nucleus, peroxisome	53.76	56.93
Os02t0643600-00	Rice	nucleus	58.5	56.76
Zm00001d017396_P001	Maize	nucleus	33.43	56.34
HORVU7Hr1G000140.6	Barley	nucleus	54.32	55.87
GSMUA_Achr6P36840_001	Banana	nucleus	57.1	55.56
VIT_04s0023g03110.t01	Wine grape	nucleus	50.97	54.63
TraesCS6B01G286200.1	Wheat	cytosol	56.27	53.02
CDY00280	Canola	nucleus	38.16	52.69
Os06t0104200-01	Rice	nucleus	52.92	52.2
AT5G62380.1	Thale cress	nucleus	46.52	47.99
Bra010077.1-P	Field mustard	nucleus	45.68	47.26
CDY16776	Canola	nucleus	43.18	46.69
CDY58006	Canola	nucleus	45.13	46.55
CDX87246	Canola	nucleus	43.45	46.43
Bra035896.1-P	Field mustard	nucleus	42.9	46.39
CDY30716	Canola	nucleus	46.24	45.98
Bra029266.1-P	Field mustard	nucleus	45.96	45.33
VIT_18s0072g01060.t01	Wine grape	nucleus	39.28	45.05
VIT_19s0085g01210.t01	Wine grape	nucleus	38.44	44.23
VIT_15s0048g02660.t01	Wine grape	nucleus	42.34	39.38
VIT_02s0025g02710.t01	Wine grape	nucleus	41.78	37.04
Bra029264.1-P	Field mustard	nucleus	30.92	36.51
VIT_18s0089g01120.t01	Wine grape	nucleus	36.49	36.49
CDY00281	Canola	cytosol	5.57	29.85

Protein Annotations

EntrezGene:100258785	wikigene:100258785	MapMan:15.5.17	Gene3D:3.30.310.150	ProteinID:CCB49324	ProteinID:CCB49324.1
UniProt:F6HAP1	EMBL:FN595506	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003441
InterPro:IPR036093	EntrezGene:LOC100258785	wikigene:LOC100258785	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365
PFscan:PS51005	PANTHER:PTHR31989	PANTHER:PTHR31989:SF3	SUPFAM:SSF101941	UniParc:UPI0002108D49	ArrayExpress:VIT_16s0022g00690
EnsemblPlantsGene:VIT_16s0022g00690	EnsemblPlants:VIT_16s0022g00690.t01	RefSeq:XP_002264986	RefSeq:XP_002264986.2	SEG:seg	:

Description

No Description!

Coordinates

chr16:-:12087360..12089501

Molecular Weight (calculated)

41659.9 Da

IEP (calculated)

6.794

GRAVY (calculated)

-0.720

Length

359 amino acids

Sequence
(BLAST)

001: MNTFAHVPPG FRFHPTDEEL VDYYLRKKVT SRRIDLDVIK DVDLYKIEPW DLQELCRIGT DEQNEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI
101: YSKHDLIGMR KTLVFYKGRA PNGQKSDWIM HEYRLETDEN GTPQAKGWVV CRVFKKRIAT VRKMSEHESP CWYDDQVSFM PELESPKQNS HSNMAYHLPY
201: SCKKEIDLQY QIPHEQFLQL PLLESPKLLQ TAATTVSCNS MVAYGIDINH GTTLQSPSLT QDEHIRQQAH EQNLHPIYVY NNNELAVDQV TDWRVLHKFV
301: ASQLSHEDVS KENNYSSNAA TLFHAAEHPN LLVQHLNKEE AVPENASTST SSCQIELWK

Best Arabidopsis Sequence Match ( AT1G12260.1 )
(BLAST)

001: MNSFSHVPPG FRFHPTDEEL VDYYLRKKVA SKRIEIDFIK DIDLYKIEPW DLQELCKIGH EEQSDWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI
101: YLRHSLIGMR KTLVFYKGRA PNGQKSDWIM HEYRLETDEN GTPQEEGWVV CRVFKKRLAA VRRMGDYDSS PSHWYDDQLS FMASELETNG QRRILPNHHQ
201: QQQHEHQQHM PYGLNASAYA LNNPNLQCKQ ELELHYNHLV QRNHLLDESH LSFLQLPQLE SPKIQQDNSN CNSLPYGTSN IDNNSSHNAN LQQSNIAHEE
301: QLNQGNQNFS SLYMNSGNEQ VMDQVTDWRV LDKFVASQLS NEEAATASAS IQNNAKDTSN AEYQVDEEKD PKRASDMGEE YTASTSSSCQ IDLWK

Arabidopsis Description

NAC007NAC domain-containing protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWX2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.