Factsheet for VIT_02s0154g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57345	Soybean	nucleus	76.47	75.0
KRH04074	Soybean	nucleus	76.75	74.86
VIT_16s0022g00690.t01	Wine grape	cytosol, nucleus, peroxisome	75.07	74.65
KRH28034	Soybean	nucleus	71.71	71.11
Solyc08g079120.1.1	Tomato	cytosol, nucleus, plastid	56.02	65.15
CDY46914	Canola	nucleus	64.71	63.99
CDY31835	Canola	nucleus	64.15	63.43
PGSC0003DMT400012079	Potato	nucleus	52.38	62.75
CDY31249	Canola	nucleus	63.87	62.47
CDY21041	Canola	nucleus	61.62	62.32
CDX98078	Canola	nucleus	58.54	61.83
CDY15987	Canola	nucleus	58.26	61.36
Bra026981.1-P	Field mustard	nucleus	57.98	60.88
CDY26551	Canola	nucleus	57.98	60.88
AT1G12260.1	Thale cress	nucleus	65.83	59.49
AT1G62700.1	Thale cress	nucleus	64.99	58.88
Bra016783.1-P	Field mustard	nucleus	63.59	58.51
Bra027024.1-P	Field mustard	nucleus	63.87	58.16
CDY30057	Canola	nucleus	64.15	58.12
Bra019750.1-P	Field mustard	nucleus	63.03	57.25
VIT_04s0023g03110.t01	Wine grape	nucleus	52.38	55.82
VIT_19s0085g01210.t01	Wine grape	nucleus	40.34	46.15
VIT_18s0072g01060.t01	Wine grape	nucleus	40.34	46.01
VIT_15s0048g02660.t01	Wine grape	nucleus	42.02	38.86
VIT_02s0025g02710.t01	Wine grape	nucleus	43.7	38.52
VIT_18s0089g01120.t01	Wine grape	nucleus	36.97	36.77
Os04t0443801-02	Rice	mitochondrion	0.0	0.0

Protein Annotations

EntrezGene:100242025	wikigene:100242025	EntrezGene:100853546	wikigene:100853546	MapMan:15.5.17	Gene3D:3.30.310.150
ProteinID:CCB56496	ProteinID:CCB56496.1	UniProt:F6HP90	EMBL:FN596001	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR003441	InterPro:IPR036093	EntrezGene:LOC100242025	wikigene:LOC100242025	EntrezGene:LOC100853546
wikigene:LOC100853546	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31989
PANTHER:PTHR31989:SF3	SUPFAM:SSF101941	UniParc:UPI0002108287	ArrayExpress:VIT_02s0154g00020	EnsemblPlantsGene:VIT_02s0154g00020	EnsemblPlants:VIT_02s0154g00020.t01
RefSeq:XP_002264342	RefSeq:XP_002264342.2	:	:	:	:

Description

No Description!

Coordinates

chr2:+:4836970..4839472

Molecular Weight (calculated)

41373.4 Da

IEP (calculated)

7.392

GRAVY (calculated)

-0.831

Length

357 amino acids

Sequence
(BLAST)

001: MNTFSHVPPG FRFHPTDEEL VDYYLRKKVA SRRIDLDVIK DVDLYKIEPW DLQELCKIGT EEQNEWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI
101: YCKHSLIGMR KTLVFYKGRA PNGQKSDWIM HEYRLETNEN GTPQAKGWVV CRVFKKRMAT MRKVGEHGSP CWYDDQVSFM PDLDSPRRIS QPYTSFQHHY
201: SCKQELELPY NMPHDPYLQL PQLESPKLPQ SAASVSCNSV APYGFDRHNG STLQSSTLTQ EEHIQQSYQQ NMSSLYSSNN EQAVDQVTDW RVLDKFVASQ
301: LSHDQDASKE TNYSNAAVPT FHVADHMNLL VNDSKRPEIP QEYASTSTSS CQIDLWK

Best Arabidopsis Sequence Match ( AT1G12260.1 )
(BLAST)

001: MNSFSHVPPG FRFHPTDEEL VDYYLRKKVA SKRIEIDFIK DIDLYKIEPW DLQELCKIGH EEQSDWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI
101: YLRHSLIGMR KTLVFYKGRA PNGQKSDWIM HEYRLETDEN GTPQEEGWVV CRVFKKRLAA VRRMGDYDSS PSHWYDDQLS FMASELETNG QRRILPNHHQ
201: QQQHEHQQHM PYGLNASAYA LNNPNLQCKQ ELELHYNHLV QRNHLLDESH LSFLQLPQLE SPKIQQDNSN CNSLPYGTSN IDNNSSHNAN LQQSNIAHEE
301: QLNQGNQNFS SLYMNSGNEQ VMDQVTDWRV LDKFVASQLS NEEAATASAS IQNNAKDTSN AEYQVDEEKD PKRASDMGEE YTASTSSSCQ IDLWK

Arabidopsis Description

NAC007NAC domain-containing protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWX2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.