Factsheet for VIT_18s0089g01120.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23778	Soybean	nucleus	70.75	71.35
KRH40024	Soybean	nucleus	71.03	71.03
CDY05099	Canola	nucleus	64.35	69.37
CDX90756	Canola	nucleus	63.79	68.98
Bra000709.1-P	Field mustard	nucleus	64.62	68.04
Bra037914.1-P	Field mustard	nucleus	64.62	67.84
AT4G10350.1	Thale cress	nucleus	62.67	65.98
AT1G33280.1	Thale cress	nucleus	54.87	64.59
Solyc06g063430.1.1	Tomato	nucleus	54.04	61.01
GSMUA_Achr6P28890_001	Banana	nucleus	52.09	58.62
GSMUA_Achr2P05640_001	Banana	cytosol, nucleus, plastid	50.14	56.25
Zm00001d003583_P001	Maize	nucleus	50.97	56.13
TraesCS2A01G311500.1	Wheat	nucleus	51.81	55.36
TraesCS2D01G309800.1	Wheat	nucleus	51.81	55.36
TraesCS2B01G328300.1	Wheat	nucleus	51.81	55.36
Zm00001d025483_P001	Maize	nucleus	51.25	54.76
EES12234	Sorghum	nucleus	52.37	54.65
VIT_19s0085g01210.t01	Wine grape	nucleus	41.23	47.44
VIT_04s0023g03110.t01	Wine grape	nucleus	38.44	41.19
VIT_15s0048g02660.t01	Wine grape	nucleus	42.62	39.64
VIT_18s0072g01060.t01	Wine grape	nucleus	33.7	38.66
VIT_02s0025g02710.t01	Wine grape	nucleus	42.06	37.28
VIT_02s0154g00020.t01	Wine grape	nucleus	36.77	36.97
VIT_16s0022g00690.t01	Wine grape	cytosol, nucleus, peroxisome	36.49	36.49

Protein Annotations

EntrezGene:100248262	wikigene:100248262	MapMan:15.5.17	Gene3D:3.30.310.150	EMBL:AM466808	ProteinID:CAN70403
ProteinID:CAN70403.1	ProteinID:CCB44108	ProteinID:CCB44108.1	UniProt:F6GVX3	EMBL:FN594956	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR003441	InterPro:IPR036093	EntrezGene:LOC100248262	wikigene:LOC100248262
InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31989	PANTHER:PTHR31989:SF113
SUPFAM:SSF101941	UniParc:UPI00015CBB4D	ArrayExpress:VIT_18s0089g01120	EnsemblPlantsGene:VIT_18s0089g01120	EnsemblPlants:VIT_18s0089g01120.t01	RefSeq:XP_002264688
RefSeq:XP_002264688.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr18:+:29018757..29021753

Molecular Weight (calculated)

41025.1 Da

IEP (calculated)

7.942

GRAVY (calculated)

-0.906

Length

359 amino acids

Sequence
(BLAST)

001: MTSSSGGVPP GFRFHPTDEE LLHYYLKKKV SYQKFDMEVI REVDLNKMEP WELQERCRIG STPQNEWYFF SHKDRKYPTG SRTNRATNAG FWKATGRDKC
101: IRNSFKKIGM RKTLVFYRGR APHGQKTDWI MHEYRLEDAD DSPGNPSEDG WVVCRVFKKK NLFKLGTEGG GSSSASMAGL DQQLNINTSS TTDHPRSFTH
201: RDTQYLPRPQ SLPFHYSHIP TPQYSHNLQS QTLLPPHKPI AYDFSPLPSD SPVMIKQLMS NPRDCESAGS ESLRYQPCEP GMEVNTCEPG AHHHQHMVGP
301: GREESLSEWS MLDRLVTSHL SHEDSSSKGV RFEDGNGSSV QQMNQLSLRG EMDFWGYGK

Best Arabidopsis Sequence Match ( AT4G10350.1 )
(BLAST)

001: MGSSSNGGVP PGFRFHPTDE ELLHYYLKKK ISYQKFEMEV IREVDLNKLE PWDLQERCKI GSTPQNEWYF FSHKDRKYPT GSRTNRATHA GFWKATGRDK
101: CIRNSYKKIG MRKTLVFYKG RAPHGQKTDW IMHEYRLEDA DDPQANPSED GWVVCRVFMK KNLFKVVNEG SSSINSLDQH NHDASNNNHA LQARSFMHRD
201: SPYQLVRNHG AMTFELNKPD LALHQYPPIF HKPPSLGFDY SSGLARDSES AASEGLQYQQ ACEPGLDVGT CETVASHNHQ QGLGEWAMMD RLVTCHMGNE
301: DSSRGITYED GNNNSSSVVQ PVPATNQLTL RSEMDFWGYS K

Arabidopsis Description

BRN2Protein BEARSKIN2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SV87]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.