Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90756 | Canola | nucleus | 98.8 | 99.1 |
| Bra000709.1-P | Field mustard | nucleus | 98.8 | 96.48 |
| AT4G10350.1 | Thale cress | nucleus | 93.69 | 91.5 |
| CDY70728 | Canola | nucleus | 35.44 | 65.92 |
| CDY72666 | Canola | nucleus | 31.53 | 64.42 |
| VIT_18s0089g01120.t01 | Wine grape | nucleus | 69.37 | 64.35 |
| KRH23778 | Soybean | nucleus | 68.17 | 63.76 |
| KRH40024 | Soybean | nucleus | 67.87 | 62.95 |
| CDX69209 | Canola | cytosol, mitochondrion, nucleus | 30.03 | 62.89 |
| Solyc06g063430.1.1 | Tomato | nucleus | 54.65 | 57.23 |
| CDY62781 | Canola | nucleus | 26.73 | 56.33 |
| CDY35029 | Canola | cytosol | 35.14 | 56.25 |
| Zm00001d003583_P001 | Maize | nucleus | 51.95 | 53.07 |
| GSMUA_Achr6P28890_001 | Banana | nucleus | 50.15 | 52.35 |
| GSMUA_Achr2P05640_001 | Banana | cytosol, nucleus, plastid | 49.25 | 51.25 |
| TraesCS2A01G311500.1 | Wheat | nucleus | 51.35 | 50.89 |
| TraesCS2B01G328300.1 | Wheat | nucleus | 51.35 | 50.89 |
| TraesCS2D01G309800.1 | Wheat | nucleus | 51.35 | 50.89 |
| Zm00001d025483_P001 | Maize | nucleus | 50.75 | 50.3 |
| EES12234 | Sorghum | nucleus | 51.65 | 50.0 |
| CDY26917 | Canola | nucleus | 40.54 | 43.83 |
| CDY11382 | Canola | cytosol, nucleus, plastid | 40.24 | 41.61 |
| CDX73267 | Canola | cytosol | 39.94 | 40.92 |
| CDY25087 | Canola | cytosol, nucleus, peroxisome | 39.94 | 40.8 |
| CDY00280 | Canola | nucleus | 31.83 | 40.77 |
| CDX76597 | Canola | cytosol, nucleus, peroxisome | 40.24 | 40.36 |
| CDX67870 | Canola | nucleus | 39.94 | 39.58 |
| CDY30778 | Canola | nucleus | 33.63 | 37.97 |
| CDY27524 | Canola | nucleus | 41.44 | 37.91 |
| CDY45221 | Canola | nucleus | 33.33 | 37.76 |
| CDY22285 | Canola | nucleus | 39.34 | 37.75 |
| CDX80045 | Canola | nucleus | 40.54 | 37.6 |
| CDY41554 | Canola | nucleus | 40.24 | 37.53 |
| CDY70056 | Canola | nucleus | 39.94 | 37.25 |
| CDY71976 | Canola | nucleus | 39.04 | 37.25 |
| CDX93819 | Canola | nucleus | 39.94 | 36.54 |
| CDX87372 | Canola | nucleus | 39.34 | 36.39 |
| CDY01243 | Canola | nucleus | 40.54 | 36.39 |
| CDX88550 | Canola | nucleus | 39.64 | 36.36 |
| CDY47055 | Canola | nucleus | 34.53 | 35.17 |
| CDX98078 | Canola | nucleus | 34.83 | 34.32 |
| CDY16776 | Canola | nucleus | 33.93 | 34.04 |
| CDX87246 | Canola | nucleus | 34.23 | 33.93 |
| CDX72580 | Canola | nucleus | 34.53 | 33.92 |
| CDY15987 | Canola | nucleus | 34.53 | 33.92 |
| CDY58006 | Canola | nucleus | 35.44 | 33.91 |
| CDX72846 | Canola | nucleus | 33.03 | 33.85 |
| CDX96362 | Canola | nucleus | 33.03 | 33.85 |
| CDY26551 | Canola | nucleus | 34.53 | 33.82 |
| CDX75558 | Canola | nucleus | 34.83 | 33.82 |
| CDX69208 | Canola | nucleus | 34.53 | 33.53 |
| CDY21041 | Canola | nucleus | 35.44 | 33.43 |
| CDX82202 | Canola | nucleus | 32.73 | 33.33 |
| CDY03671 | Canola | nucleus | 32.73 | 33.33 |
| CDY31835 | Canola | nucleus | 35.74 | 32.96 |
| CDY46914 | Canola | nucleus | 35.44 | 32.69 |
| CDY30716 | Canola | nucleus | 35.44 | 32.69 |
| CDY31249 | Canola | nucleus | 35.74 | 32.6 |
| CDY38177 | Canola | nucleus | 34.23 | 31.58 |
| CDY30057 | Canola | nucleus | 36.04 | 30.46 |
| CDY00281 | Canola | cytosol | 2.4 | 11.94 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:A0A078EWW4 | InterPro:BRN1/BRN2 | EnsemblPlants:CDY05099 | ProteinID:CDY05099 |
| ProteinID:CDY05099.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00119863001 |
| InterPro:IPR003441 | InterPro:IPR036093 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 |
| PANTHER:PTHR31989 | PANTHER:PTHR31989:SF18 | SUPFAM:SSF101941 | UniParc:UPI0004EDC1FE | : | : |
Description
BnaC03g28970D
Coordinates
chrLK031959:-:600455..601999
Molecular Weight (calculated)
38144.5 Da
IEP (calculated)
7.153
GRAVY (calculated)
-0.870
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSSSNGGVP PGFRFHPTDE ELLHYYLKKK ISYHKFEMEV IREVDLNKLE PWDLQERCKI GSTPQNEWYF FSHKDRKYPT GSRTNRATHA GFWKATGRDK
101: CIRNSYKKIG MRKTLVFYKG RAPHGQKTDW IMHEYRLEDT DDPQGNPSED GWVVCRVFMK KNLFKVVTEG GSSINSTDQC NHDASNNNNS LQARSFMHRD
201: SPYQLVRNHG ATTFELNKPD LTLHQYPPIF HKPPSLGFDY SAGLPRDCES AASEGLQYQQ ACEPGLEVGT CETVASEWSM MDRLVTCHMG NEDSSRGIRF
301: EDGNNNSSSV VQPVPETNQL SLRSEMDFWG YSK
101: CIRNSYKKIG MRKTLVFYKG RAPHGQKTDW IMHEYRLEDT DDPQGNPSED GWVVCRVFMK KNLFKVVTEG GSSINSTDQC NHDASNNNNS LQARSFMHRD
201: SPYQLVRNHG ATTFELNKPD LTLHQYPPIF HKPPSLGFDY SAGLPRDCES AASEGLQYQQ ACEPGLEVGT CETVASEWSM MDRLVTCHMG NEDSSRGIRF
301: EDGNNNSSSV VQPVPETNQL SLRSEMDFWG YSK
001: MGSSSNGGVP PGFRFHPTDE ELLHYYLKKK ISYQKFEMEV IREVDLNKLE PWDLQERCKI GSTPQNEWYF FSHKDRKYPT GSRTNRATHA GFWKATGRDK
101: CIRNSYKKIG MRKTLVFYKG RAPHGQKTDW IMHEYRLEDA DDPQANPSED GWVVCRVFMK KNLFKVVNEG SSSINSLDQH NHDASNNNHA LQARSFMHRD
201: SPYQLVRNHG AMTFELNKPD LALHQYPPIF HKPPSLGFDY SSGLARDSES AASEGLQYQQ ACEPGLDVGT CETVASHNHQ QGLGEWAMMD RLVTCHMGNE
301: DSSRGITYED GNNNSSSVVQ PVPATNQLTL RSEMDFWGYS K
101: CIRNSYKKIG MRKTLVFYKG RAPHGQKTDW IMHEYRLEDA DDPQANPSED GWVVCRVFMK KNLFKVVNEG SSSINSLDQH NHDASNNNHA LQARSFMHRD
201: SPYQLVRNHG AMTFELNKPD LALHQYPPIF HKPPSLGFDY SSGLARDSES AASEGLQYQQ ACEPGLDVGT CETVASHNHQ QGLGEWAMMD RLVTCHMGNE
301: DSSRGITYED GNNNSSSVVQ PVPATNQLTL RSEMDFWGYS K
Arabidopsis Description
BRN2Protein BEARSKIN2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SV87]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.