Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70728 | Canola | nucleus | 49.57 | 96.09 |
| CDY71976 | Canola | nucleus | 89.34 | 88.83 |
| CDY70056 | Canola | nucleus | 89.91 | 87.39 |
| CDX87372 | Canola | nucleus | 88.76 | 85.56 |
| CDX88550 | Canola | nucleus | 89.05 | 85.12 |
| AT1G79580.4 | Thale cress | nucleus | 90.2 | 84.37 |
| VIT_19s0085g01210.t01 | Wine grape | nucleus | 58.5 | 65.06 |
| CDY72666 | Canola | nucleus | 29.97 | 63.8 |
| CDX69209 | Canola | cytosol, mitochondrion, nucleus | 28.82 | 62.89 |
| GSMUA_Achr2P20020_001 | Banana | cytosol, nucleus, plastid | 51.01 | 62.32 |
| Os06t0530400-01 | Rice | cytosol, nucleus, peroxisome | 35.45 | 60.89 |
| KRH13825 | Soybean | cytosol, nucleus, peroxisome | 56.77 | 60.43 |
| KRH43624 | Soybean | cytosol, nucleus, peroxisome | 56.48 | 59.76 |
| PGSC0003DMT400025026 | Potato | nucleus | 55.33 | 59.26 |
| GSMUA_Achr10P... | Banana | nucleus | 51.59 | 57.74 |
| Solyc12g017400.1.1 | Tomato | nucleus | 53.03 | 57.68 |
| GSMUA_Achr10P... | Banana | nucleus | 45.53 | 54.86 |
| CDY35029 | Canola | cytosol | 32.28 | 53.85 |
| KXG20105 | Sorghum | cytosol, nucleus, plastid | 50.72 | 49.58 |
| Zm00001d046126_P001 | Maize | cytosol, nucleus, plastid | 50.43 | 49.02 |
| Zm00001d037029_P001 | Maize | nucleus | 50.43 | 47.81 |
| CDY62781 | Canola | nucleus | 21.61 | 47.47 |
| GSMUA_Achr3P03500_001 | Banana | nucleus | 29.68 | 47.47 |
| Os02t0252200-01 | Rice | nucleus | 48.99 | 47.35 |
| EES04857 | Sorghum | nucleus | 46.4 | 46.8 |
| TraesCS7A01G349500.1 | Wheat | nucleus | 49.57 | 46.74 |
| TraesCS7D01G329200.1 | Wheat | nucleus | 49.57 | 46.74 |
| HORVU7Hr1G079500.1 | Barley | nucleus | 49.57 | 46.49 |
| TraesCS7B01G233300.1 | Wheat | nucleus | 49.28 | 45.97 |
| Zm00001d016119_P001 | Maize | cytosol, nucleus, plastid | 46.11 | 45.85 |
| CDY26917 | Canola | nucleus | 38.04 | 42.86 |
| CDX73267 | Canola | cytosol | 38.33 | 40.92 |
| CDY45221 | Canola | nucleus | 34.29 | 40.48 |
| CDY30778 | Canola | nucleus | 34.29 | 40.34 |
| CDY11382 | Canola | cytosol, nucleus, plastid | 37.18 | 40.06 |
| CDX90756 | Canola | nucleus | 37.75 | 39.46 |
| CDY05099 | Canola | nucleus | 37.75 | 39.34 |
| CDX80045 | Canola | nucleus | 40.63 | 39.28 |
| CDY25087 | Canola | cytosol, nucleus, peroxisome | 36.89 | 39.26 |
| CDY00280 | Canola | nucleus | 29.39 | 39.23 |
| CDY41554 | Canola | nucleus | 40.06 | 38.94 |
| CDX76597 | Canola | cytosol, nucleus, peroxisome | 37.18 | 38.86 |
| CDX93819 | Canola | nucleus | 40.35 | 38.46 |
| CDY01243 | Canola | nucleus | 40.63 | 38.01 |
| CDY27524 | Canola | nucleus | 39.77 | 37.91 |
| CDX67870 | Canola | nucleus | 36.6 | 37.8 |
| OQU76499 | Sorghum | nucleus | 30.55 | 37.06 |
| CDX96362 | Canola | nucleus | 34.29 | 36.62 |
| CDX72846 | Canola | nucleus | 34.01 | 36.31 |
| CDY47055 | Canola | nucleus | 33.72 | 35.78 |
| CDX82202 | Canola | nucleus | 33.43 | 35.47 |
| CDY03671 | Canola | nucleus | 33.43 | 35.47 |
| CDX69208 | Canola | nucleus | 34.29 | 34.69 |
| CDX75558 | Canola | nucleus | 34.29 | 34.69 |
| CDY46914 | Canola | nucleus | 36.02 | 34.63 |
| CDY31835 | Canola | nucleus | 36.02 | 34.63 |
| CDX72580 | Canola | nucleus | 33.72 | 34.51 |
| CDY26551 | Canola | nucleus | 33.43 | 34.12 |
| CDX98078 | Canola | nucleus | 33.14 | 34.02 |
| CDY15987 | Canola | nucleus | 33.14 | 33.92 |
| CDY38177 | Canola | nucleus | 35.16 | 33.8 |
| CDY21041 | Canola | nucleus | 34.29 | 33.71 |
| CDX87246 | Canola | nucleus | 31.99 | 33.04 |
| CDY31249 | Canola | nucleus | 34.58 | 32.88 |
| CDY16776 | Canola | nucleus | 31.41 | 32.83 |
| CDY58006 | Canola | nucleus | 31.99 | 31.9 |
| CDY30057 | Canola | nucleus | 35.45 | 31.22 |
| CDY30716 | Canola | nucleus | 32.28 | 31.02 |
| CDY00281 | Canola | cytosol | 2.31 | 11.94 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:A0A078G734 | UniProt:A0A078G734 | EnsemblPlants:CDY22285 | ProteinID:CDY22285 |
| ProteinID:CDY22285.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0048829 |
| EnsemblPlantsGene:GSBRNA2T00018746001 | InterPro:IPR003441 | InterPro:IPR036093 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 |
| PFscan:PS51005 | PANTHER:PTHR31989 | PANTHER:PTHR31989:SF16 | InterPro:SMB | SUPFAM:SSF101941 | UniParc:UPI0004EDADC1 |
| SEG:seg | : | : | : | : | : |
Description
BnaC02g25890DBnaC02g25890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G734]
Coordinates
chrLK032129:-:553242..555316
Molecular Weight (calculated)
40177.5 Da
IEP (calculated)
7.403
GRAVY (calculated)
-0.966
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MEIGSSSKVA GGAQLSVPPG FRFHPTEEEL LYYYLKKKVS YEPIDLDVIR EVDLNKLEPW ELQDKCRIGS GPQNEWYFFS HKDKKYPTGT RTNRATAAGF
101: WKATGRDKSI HLNSSKKIGL RKTLVFYTGR APHGHKTEWI MHEYRLDDNE NEIQEDGWVV CRVFKKKNHF RGFQQEQDQD HHHHQYININ SDHDHHHQHD
201: TESNSNNHSS LISHSLDHHH HMGRQVHMPL HEFANTLSHG SMHLPHLFSP DSAQPFVSSI NTTDIECSQN LPRLTSNNNY GGDWSFLDKL LTTTNMNQQV
301: HNHQAKCFGE TRNNCNNDHA VTSSSPVNQR FPFHYLGNDA NPLKFTK
101: WKATGRDKSI HLNSSKKIGL RKTLVFYTGR APHGHKTEWI MHEYRLDDNE NEIQEDGWVV CRVFKKKNHF RGFQQEQDQD HHHHQYININ SDHDHHHQHD
201: TESNSNNHSS LISHSLDHHH HMGRQVHMPL HEFANTLSHG SMHLPHLFSP DSAQPFVSSI NTTDIECSQN LPRLTSNNNY GGDWSFLDKL LTTTNMNQQV
301: HNHQAKCFGE TRNNCNNDHA VTSSSPVNQR FPFHYLGNDA NPLKFTK
001: MEIGSSSTVA GGGQLSVPPG FRFHPTEEEL LYYYLKKKVS YEPIDLDVIR EVDLNKLEPW ELKEKCRIGS GPQNEWYFFS HKDKKYPTGT RTNRATAAGF
101: WKATGRDKSI HLNSSKKIGL RKTLVFYTGR APHGQKTEWI MHEYRLDDSE NEIQEDGWVV CRVFKKKNHF RGFHQEQEQD HHHHHQYIST NNDHDHHHHI
201: DSNSNNHSPL ILHPLDHHHH HHHIGRQIHM PLHEFANTLS HGSMHLPQLF SPDSAAAAAA AAASAQPFVS PINTTDIECS QNLLRLTSNN NYGGDWSFLD
301: KLLTTGNMNQ QQQQQVQNHQ AKCFGDLSNN DNNDQADHLG NNNGGSSSSP VNQRFPFHYL GNDANLLKFP K
101: WKATGRDKSI HLNSSKKIGL RKTLVFYTGR APHGQKTEWI MHEYRLDDSE NEIQEDGWVV CRVFKKKNHF RGFHQEQEQD HHHHHQYIST NNDHDHHHHI
201: DSNSNNHSPL ILHPLDHHHH HHHIGRQIHM PLHEFANTLS HGSMHLPQLF SPDSAAAAAA AAASAQPFVS PINTTDIECS QNLLRLTSNN NYGGDWSFLD
301: KLLTTGNMNQ QQQQQVQNHQ AKCFGDLSNN DNNDQADHLG NNNGGSSSSP VNQRFPFHYL GNDANLLKFP K
Arabidopsis Description
SMBProtein SOMBRERO [Source:UniProtKB/Swiss-Prot;Acc:Q9MA17]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.