Factsheet for Os02t0252200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70728	Canola	nucleus	36.49	73.18
EES04857	Sorghum	nucleus	67.13	70.06
Os06t0530400-01	Rice	cytosol, nucleus, peroxisome	38.44	68.32
Zm00001d016119_P001	Maize	cytosol, nucleus, plastid	64.35	66.19
GSMUA_Achr2P20020_001	Banana	cytosol, nucleus, plastid	50.42	63.73
Os04t0536500-01	Rice	cytosol	28.13	62.35
VIT_19s0085g01210.t01	Wine grape	nucleus	53.76	61.86
GSMUA_Achr10P...	Banana	nucleus	52.37	60.65
GSMUA_Achr10P...	Banana	nucleus	46.24	57.64
KRH43624	Soybean	cytosol, nucleus, peroxisome	52.65	57.62
KRH13825	Soybean	cytosol, nucleus, peroxisome	52.09	57.36
PGSC0003DMT400025026	Potato	nucleus	49.86	55.25
Solyc12g017400.1.1	Tomato	nucleus	47.91	53.92
GSMUA_Achr3P03500_001	Banana	nucleus	30.36	50.23
Os08t0115800-01	Rice	nucleus	34.82	49.41
CDY71976	Canola	nucleus	47.63	49.0
CDY22285	Canola	nucleus	47.35	48.99
Bra008423.1-P	Field mustard	nucleus	47.35	48.71
CDX87372	Canola	nucleus	47.63	47.5
Bra035127.1-P	Field mustard	nucleus	47.35	47.35
CDY70056	Canola	nucleus	47.08	47.34
CDX88550	Canola	nucleus	47.63	47.11
Bra003602.1-P	Field mustard	nucleus	46.8	47.06
AT1G79580.4	Thale cress	nucleus	47.91	46.36
Os02t0643600-00	Rice	nucleus	39.83	38.65
Os10t0532000-01	Rice	cytosol	35.1	36.95
Os06t0104200-01	Rice	nucleus	37.33	36.81
Os06t0131700-01	Rice	nucleus	40.39	36.71
Os08t0103900-01	Rice	nucleus	32.03	35.49
Os04t0691300-00	Rice	cytosol, nucleus	28.13	35.31
Os04t0443801-02	Rice	mitochondrion	0.28	0.27

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	EntrezGene:4328901	EMBL:AK063943	EMBL:AK101280	ProteinID:BAD19765.1
ProteinID:BAF08363.1	ProteinID:BAS77917.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0048829	InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	EnsemblPlantsGene:Os02g0252200
EnsemblPlants:Os02t0252200-01	PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31989	PANTHER:PTHR31989:SF111	UniProt:Q6K539
SUPFAM:SSF101941	UniParc:UPI000037595A	RefSeq:XP_015624882.1	SEG:seg	:	:

Description

NAC DOMAIN-CONTAINING PROTEIN 13Similar to GRAB2 protein. (Os02t0252200-01);Similar to GRAB2 protein. (Os02t0252200-02)

Coordinates

chr2:+:8582543..8584532

Molecular Weight (calculated)

39270.8 Da

IEP (calculated)

6.872

GRAVY (calculated)

-0.341

Length

359 amino acids

Sequence
(BLAST)

001: MHPNGAPLAV PPGFRFHPTD EELLYYYLRK KVAYEAIDLD VIREIDLNKL EPWDLKDRCR IGTGAQEEWY FFSHKDKKYP TGTRTNRATV AGFWKATGRD
101: KAIFLGSGGG TRIGLRKTLV FYTGRAPHGK KTDWIMHEYR LDDDNVDVPE EGWVVCRVFK KKSIHQRGFD QPDMAAAADE DELRYQLLHG AGMSSSPVDQ
201: KHVLLQEQLV AHGAHGGGFV VPAFEASMHL PQLASADAAP CGGGGGGHVA FASMNPLDAA GCGSQNMMTM KMAATSGGEM LLMSGGGVDG GRFGAAADWS
301: ILDKLLASHQ NLDQLFHGKV AGAHQQQQQM AMDAASSLQR LPFHHYLGLE AADLLKFSM

Best Arabidopsis Sequence Match ( AT1G79580.3 )
(BLAST)

001: MEIGSSSTVA GGGQLSVPPG FRFHPTEEEL LYYYLKKKVS YEPIDLDVIR EVDLNKLEPW ELKEKCRIGS GPQNEWYFFS HKDKKYPTGT RTNRATAAGF
101: WKATGRDKSI HLNSSKKIGL RKTLVFYTGR APHGQKTEWI MHEYRLDDSE NEIQEDGWVV CRVFKKKNHF RGFHQEQEQD HHHHHQYIST NNDHDHHHHI
201: DSNSNNHSPL ILHPLDHHHH HHHIGRQIHM PLHEFANTLS HGSMHLPQLF SPDSAAAAAA AAASAQPFVS PINTTDIECS QNLLRLTSNN NYGGDWSFLD
301: KLLTTGNMNQ QQQQQVQNHQ AKCFGDLSNN DNNDQADHLG NNNGGSSSSP VNQRFPFHYL GNDANLLKFP K

Arabidopsis Description

SMBProtein SOMBRERO [Source:UniProtKB/Swiss-Prot;Acc:Q9MA17]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.