CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43624	Soybean	cytosol, nucleus, peroxisome	93.25	92.68
CDY70728	Canola	nucleus	43.25	78.77
VIT_19s0085g01210.t01	Wine grape	nucleus	74.54	77.88
GSMUA_Achr2P20020_001	Banana	cytosol, nucleus, plastid	61.04	70.07
Os06t0530400-01	Rice	cytosol, nucleus, peroxisome	41.72	67.33
GSMUA_Achr10P...	Banana	nucleus	63.19	66.45
PGSC0003DMT400025026	Potato	nucleus	64.42	64.81
Solyc12g017400.1.1	Tomato	nucleus	62.27	63.64
GSMUA_Achr10P...	Banana	nucleus	52.15	59.03
CDY22285	Canola	nucleus	60.43	56.77
CDY71976	Canola	nucleus	60.12	56.16
Bra008423.1-P	Field mustard	nucleus	59.82	55.87
CDX87372	Canola	nucleus	60.74	55.0
Bra035127.1-P	Field mustard	nucleus	60.43	54.87
CDX88550	Canola	nucleus	60.74	54.55
CDY70056	Canola	nucleus	59.51	54.34
Bra003602.1-P	Field mustard	nucleus	59.2	54.06
AT1G79580.4	Thale cress	nucleus	61.35	53.91
KXG20105	Sorghum	cytosol, nucleus, plastid	58.28	53.52
EES04857	Sorghum	nucleus	56.13	53.2
GSMUA_Achr3P03500_001	Banana	nucleus	35.28	53.0
TraesCS7D01G329200.1	Wheat	nucleus	59.2	52.45
Zm00001d016119_P001	Maize	cytosol, nucleus, plastid	56.13	52.44
TraesCS7A01G349500.1	Wheat	nucleus	58.9	52.17
Os02t0252200-01	Rice	nucleus	57.36	52.09
TraesCS7B01G233300.1	Wheat	nucleus	59.2	51.88
HORVU7Hr1G079500.1	Barley	nucleus	58.59	51.62
Zm00001d046126_P001	Maize	cytosol, nucleus, plastid	56.44	51.54
Zm00001d037029_P001	Maize	nucleus	56.44	50.27
KRG97235	Soybean	nucleus	40.18	49.43
KRG97237	Soybean	nucleus	39.88	49.06
KRH23801	Soybean	nucleus	43.25	40.63
KRH39986	Soybean	nucleus	43.56	40.11
KRH23778	Soybean	nucleus	43.56	39.89
OQU76499	Sorghum	nucleus	34.97	39.86
KRH40024	Soybean	nucleus	43.87	39.83
KRH62610	Soybean	nucleus	41.41	39.59
KRH76680	Soybean	nucleus	41.72	39.53
KRH47818	Soybean	nucleus	48.47	39.5
KRH28034	Soybean	nucleus	41.1	37.22
KRH56355	Soybean	nucleus	41.41	37.19
KRH04074	Soybean	nucleus	41.72	37.16
KRH57345	Soybean	nucleus	41.41	37.09
KRH69806	Soybean	nucleus	41.1	37.02
KRH06383	Soybean	nucleus	49.69	36.57
KRH08100	Soybean	nucleus	40.18	36.19
KRG91808	Soybean	nucleus	37.73	36.07
KRH28776	Soybean	endoplasmic reticulum, golgi, mitochondrion	41.72	35.79
KRH34977	Soybean	nucleus	37.73	35.55

Protein Annotations

EntrezGene:100815632	MapMan:15.5.17	Gene3D:3.30.310.150	EMBL:ACUP02009789	EMBL:ACUP02009790	EnsemblPlantsGene:GLYMA_15G266500
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:I1MJG9	InterPro:IPR003441	InterPro:IPR036093
EnsemblPlants:KRH13825	ProteinID:KRH13825	ProteinID:KRH13825.1	ProteinID:KRH13826.1	InterPro:NAC-dom	InterPro:NAC_dom_sf
PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31989	PANTHER:PTHR31989:SF112	SUPFAM:SSF101941	UniParc:UPI000233BE83
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:+:50221849..50225934

Molecular Weight (calculated)

37511.3 Da

IEP (calculated)

7.119

GRAVY (calculated)

-0.758

Length

326 amino acids

Sequence
(BLAST)

001: MMPGNGQLTV PPGFRFHPTD EELLYYYLRK KVSYEVIDLD VIREVDLNKL EPWDLKDKCR IGSGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD
101: KSIYHTNSKR IGMRKTLVFY TGRAPHGQKT DWIMHEYRLD EDDADVQEDG WVVCRVFKKK NQSRGFQQEL EEEEHLTTHM RASGPCQVLE QKHLHMQGGP
201: YDHYNFDGTM HLPQLFSPES AIAPPTNSSL ALSMNAMDIL ECSQNLLRLT TTGCGLNLMQ QQQEERFSGD WSFLDKLLAS HHGMDQSKCN PPTNHHAATA
301: VGTSAQKFPF HYLGCDTTHD IMKFSK

Best Arabidopsis Sequence Match ( AT1G79580.3 )
(BLAST)

001: MEIGSSSTVA GGGQLSVPPG FRFHPTEEEL LYYYLKKKVS YEPIDLDVIR EVDLNKLEPW ELKEKCRIGS GPQNEWYFFS HKDKKYPTGT RTNRATAAGF
101: WKATGRDKSI HLNSSKKIGL RKTLVFYTGR APHGQKTEWI MHEYRLDDSE NEIQEDGWVV CRVFKKKNHF RGFHQEQEQD HHHHHQYIST NNDHDHHHHI
201: DSNSNNHSPL ILHPLDHHHH HHHIGRQIHM PLHEFANTLS HGSMHLPQLF SPDSAAAAAA AAASAQPFVS PINTTDIECS QNLLRLTSNN NYGGDWSFLD
301: KLLTTGNMNQ QQQQQVQNHQ AKCFGDLSNN DNNDQADHLG NNNGGSSSSP VNQRFPFHYL GNDANLLKFP K

Arabidopsis Description

SMBProtein SOMBRERO [Source:UniProtKB/Swiss-Prot;Acc:Q9MA17]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.