Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70728 | Canola | nucleus | 28.32 | 45.25 |
| KXG20105 | Sorghum | cytosol, nucleus, plastid | 50.7 | 40.85 |
| Os06t0530400-01 | Rice | cytosol, nucleus, peroxisome | 28.67 | 40.59 |
| GSMUA_Achr2P20020_001 | Banana | cytosol, nucleus, plastid | 39.51 | 39.79 |
| Zm00001d037029_P001 | Maize | nucleus | 50.35 | 39.34 |
| GSMUA_Achr10P... | Banana | nucleus | 42.31 | 39.03 |
| TraesCS7A01G349500.1 | Wheat | nucleus | 48.6 | 37.77 |
| TraesCS7D01G329200.1 | Wheat | nucleus | 48.25 | 37.5 |
| HORVU7Hr1G079500.1 | Barley | nucleus | 48.25 | 37.3 |
| VIT_19s0085g01210.t01 | Wine grape | nucleus | 40.56 | 37.18 |
| TraesCS7B01G233300.1 | Wheat | nucleus | 48.25 | 37.1 |
| EES04857 | Sorghum | nucleus | 43.36 | 36.05 |
| KRH43624 | Soybean | cytosol, nucleus, peroxisome | 40.21 | 35.06 |
| KRH13825 | Soybean | cytosol, nucleus, peroxisome | 39.86 | 34.97 |
| GSMUA_Achr10P... | Banana | nucleus | 34.97 | 34.72 |
| PGSC0003DMT400025026 | Potato | nucleus | 38.81 | 34.26 |
| Solyc12g017400.1.1 | Tomato | nucleus | 37.41 | 33.54 |
| CDY22285 | Canola | nucleus | 37.06 | 30.55 |
| Bra008423.1-P | Field mustard | nucleus | 36.71 | 30.09 |
| CDY71976 | Canola | nucleus | 36.71 | 30.09 |
| CDY70056 | Canola | nucleus | 37.41 | 29.97 |
| GSMUA_Achr3P03500_001 | Banana | nucleus | 22.73 | 29.95 |
| Bra003602.1-P | Field mustard | nucleus | 37.06 | 29.69 |
| Bra035127.1-P | Field mustard | nucleus | 37.06 | 29.53 |
| CDX88550 | Canola | nucleus | 37.41 | 29.48 |
| CDX87372 | Canola | nucleus | 37.06 | 29.44 |
| KXG31125 | Sorghum | nucleus | 35.66 | 29.39 |
| AT1G79580.4 | Thale cress | nucleus | 37.76 | 29.11 |
| OQU82026 | Sorghum | nucleus | 33.92 | 28.53 |
| OQU75680 | Sorghum | nucleus | 32.17 | 27.14 |
| EES12234 | Sorghum | nucleus | 31.82 | 26.45 |
| EER94595 | Sorghum | cytosol, mitochondrion, nucleus | 30.07 | 25.83 |
| EES13158 | Sorghum | nucleus | 28.67 | 24.62 |
| OQU93335 | Sorghum | cytosol, mitochondrion, nucleus | 30.77 | 23.72 |
| EES14359 | Sorghum | nucleus | 27.62 | 23.58 |
| KXG24274 | Sorghum | nucleus | 33.22 | 22.67 |
| EER87784 | Sorghum | cytosol, nucleus, plastid | 33.92 | 22.66 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | UniProt:A0A1W0VT87 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0048829 | InterPro:IPR003441 | InterPro:IPR036093 | InterPro:NAC-dom | InterPro:NAC_dom_sf |
| EnsemblPlants:OQU76499 | ProteinID:OQU76499 | ProteinID:OQU76499.1 | PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31989 |
| PANTHER:PTHR31989:SF16 | InterPro:SMB | EnsemblPlantsGene:SORBI_3010G155000 | SUPFAM:SSF101941 | UniParc:UPI0009DC91D8 | : |
Description
hypothetical protein
Coordinates
chr10:-:45614381..45615832
Molecular Weight (calculated)
32100.0 Da
IEP (calculated)
6.741
GRAVY (calculated)
-0.482
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MAERCRIGTG PQNEWYFFSH KDMKYPTGTR TNRATTVGFW KATGRDKGIF LGNSRRISLR KTLVSYIGRA PHGKKTDWIM HEYRLDEENI EIHEDGWVVC
101: RVFKKNYRQG GPNPAEALPE IVVAADDDEI QHFPVPIPGS LPTEHRNNPH LMQYNFPSFD PSLQLPQLMS ADQHVPTLLR SQPGVAMPMS SLDVECSQNL
201: TKLTSNSSDG MLNGGDWLIL DMLLILHQNL DQLFHNKVTA ASSSPMTAYY QQFMELGSSS SLHRLPVQYT GSEAADFSGS QVVGST
101: RVFKKNYRQG GPNPAEALPE IVVAADDDEI QHFPVPIPGS LPTEHRNNPH LMQYNFPSFD PSLQLPQLMS ADQHVPTLLR SQPGVAMPMS SLDVECSQNL
201: TKLTSNSSDG MLNGGDWLIL DMLLILHQNL DQLFHNKVTA ASSSPMTAYY QQFMELGSSS SLHRLPVQYT GSEAADFSGS QVVGST
001: MEIGSSSTVA GGGQLSVPPG FRFHPTEEEL LYYYLKKKVS YEPIDLDVIR EVDLNKLEPW ELKEKCRIGS GPQNEWYFFS HKDKKYPTGT RTNRATAAGF
101: WKATGRDKSI HLNSSKKIGL RKTLVFYTGR APHGQKTEWI MHEYRLDDSE NEIQEDGWVV CRVFKKKNHF RGFHQEQEQD HHHHHQYIST NNDHDHHHHI
201: DSNSNNHSPL ILHPLDHHHH HHHIGRQIHM PLHEFANTLS HGSMHLPQLF SPDSAAAAAA AAASAQPFVS PINTTDIECS QNLLRLTSNN NYGGDWSFLD
301: KLLTTGNMNQ QQQQQVQNHQ AKCFGDLSNN DNNDQADHLG NNNGGSSSSP VNQRFPFHYL GNDANLLKFP K
101: WKATGRDKSI HLNSSKKIGL RKTLVFYTGR APHGQKTEWI MHEYRLDDSE NEIQEDGWVV CRVFKKKNHF RGFHQEQEQD HHHHHQYIST NNDHDHHHHI
201: DSNSNNHSPL ILHPLDHHHH HHHIGRQIHM PLHEFANTLS HGSMHLPQLF SPDSAAAAAA AAASAQPFVS PINTTDIECS QNLLRLTSNN NYGGDWSFLD
301: KLLTTGNMNQ QQQQQVQNHQ AKCFGDLSNN DNNDQADHLG NNNGGSSSSP VNQRFPFHYL GNDANLLKFP K
Arabidopsis Description
SMBProtein SOMBRERO [Source:UniProtKB/Swiss-Prot;Acc:Q9MA17]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.