Factsheet for Solyc12g017400.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400025026	Potato	nucleus	91.54	90.12
CDY70728	Canola	nucleus	43.57	77.65
Os06t0530400-01	Rice	cytosol, nucleus, peroxisome	42.95	67.82
VIT_19s0085g01210.t01	Wine grape	nucleus	64.58	66.03
GSMUA_Achr2P20020_001	Banana	cytosol, nucleus, plastid	56.43	63.38
KRH13825	Soybean	cytosol, nucleus, peroxisome	63.64	62.27
KRH43624	Soybean	cytosol, nucleus, peroxisome	63.64	61.89
GSMUA_Achr10P...	Banana	nucleus	57.37	59.03
GSMUA_Achr10P...	Banana	nucleus	50.78	56.25
CDY71976	Canola	nucleus	58.31	53.3
CDY22285	Canola	nucleus	57.68	53.03
Bra008423.1-P	Field mustard	nucleus	57.99	53.01
CDX87372	Canola	nucleus	59.25	52.5
Bra035127.1-P	Field mustard	nucleus	58.93	52.37
KXG20105	Sorghum	cytosol, nucleus, plastid	57.99	52.11
CDX88550	Canola	nucleus	59.25	52.07
CDY70056	Canola	nucleus	57.99	51.82
GSMUA_Achr3P03500_001	Banana	nucleus	35.11	51.61
Bra003602.1-P	Field mustard	nucleus	57.68	51.54
Zm00001d046126_P001	Maize	cytosol, nucleus, plastid	56.11	50.14
AT1G79580.4	Thale cress	nucleus	58.31	50.13
Zm00001d037029_P001	Maize	nucleus	57.05	49.73
TraesCS7D01G329200.1	Wheat	nucleus	57.05	49.46
TraesCS7A01G349500.1	Wheat	nucleus	57.05	49.46
HORVU7Hr1G079500.1	Barley	nucleus	57.05	49.19
TraesCS7B01G233300.1	Wheat	nucleus	57.05	48.92
Zm00001d016119_P001	Maize	cytosol, nucleus, plastid	52.66	48.14
Solyc10g005010.2.1	Tomato	nucleus	43.26	48.08
EES04857	Sorghum	nucleus	51.72	47.97
Os02t0252200-01	Rice	nucleus	53.92	47.91
Solyc08g079120.1.1	Tomato	cytosol, nucleus, plastid	42.63	44.3
Solyc03g083880.2.1	Tomato	nucleus	41.38	42.31
Solyc08g008660.2.1	Tomato	nucleus	45.45	41.55
Solyc02g084350.2.1	Tomato	nucleus	43.26	39.54
Solyc06g063430.1.1	Tomato	nucleus	38.24	38.36
Solyc06g034340.1.1	Tomato	nucleus	40.75	38.24
Solyc11g018660.1.1	Tomato	nucleus	36.68	37.62
OQU76499	Sorghum	nucleus	33.54	37.41
Solyc06g065410.2.1	Tomato	nucleus	36.36	36.02

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003002	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009834	GO:GO:0009987	GO:GO:0010455	GO:GO:0030154	GO:GO:0048829	InterPro:IPR003441
InterPro:IPR036093	UniProt:K4DD73	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005
PANTHER:PTHR31989	PANTHER:PTHR31989:SF16	InterPro:SMB	SUPFAM:SSF101941	EnsemblPlantsGene:Solyc12g017400.1	EnsemblPlants:Solyc12g017400.1.1
UniParc:UPI000276940A	SEG:seg	:	:	:	:

Description

Protein SOMBRERO [Source:Projected from Arabidopsis thaliana (AT1G79580) UniProtKB/Swiss-Prot;Acc:Q9MA17]

Coordinates

chr12:-:6650295..6652079

Molecular Weight (calculated)

36601.9 Da

IEP (calculated)

7.716

GRAVY (calculated)

-0.722

Length

319 amino acids

Sequence
(BLAST)

001: MSGSTNGHLS VPPGFRFHPT DEELLYYYLR KKVSYEAIDL DVIREVDLNK LEPWDLKEIC RIGSGPQNEW YFFSHKDKKY PTGTRTNRAT TAGFWKATGR
101: DKAIYLSNSK RIGMRKTLVF YTGRAPHGQK TDWIMHEYRL DDNNAEVEEE GWVVCRVFKK KNYARGFQHD IGEQDHEPQL SFTDPMKGGT SKQNIQQQLQ
201: TASSCYDNYQ SSFDGSMHLP QLLSPDLTLP CPSLVPPPLS NHNLLRLTST SAPNFNFPQQ HDKFSGDWSF LDKLLASSNQ AVVIQSQALT TDLVNPTNSQ
301: KYPIFNHHAF DHDIMKFSK

Best Arabidopsis Sequence Match ( AT1G79580.3 )
(BLAST)

001: MEIGSSSTVA GGGQLSVPPG FRFHPTEEEL LYYYLKKKVS YEPIDLDVIR EVDLNKLEPW ELKEKCRIGS GPQNEWYFFS HKDKKYPTGT RTNRATAAGF
101: WKATGRDKSI HLNSSKKIGL RKTLVFYTGR APHGQKTEWI MHEYRLDDSE NEIQEDGWVV CRVFKKKNHF RGFHQEQEQD HHHHHQYIST NNDHDHHHHI
201: DSNSNNHSPL ILHPLDHHHH HHHIGRQIHM PLHEFANTLS HGSMHLPQLF SPDSAAAAAA AAASAQPFVS PINTTDIECS QNLLRLTSNN NYGGDWSFLD
301: KLLTTGNMNQ QQQQQVQNHQ AKCFGDLSNN DNNDQADHLG NNNGGSSSSP VNQRFPFHYL GNDANLLKFP K

Arabidopsis Description

SMBProtein SOMBRERO [Source:UniProtKB/Swiss-Prot;Acc:Q9MA17]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.