Factsheet for Solyc08g008660.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014872	Potato	nucleus	93.98	94.25
HORVU7Hr1G012740.1	Barley	cytosol, nucleus, plastid	14.33	79.37
CDY72666	Canola	nucleus	34.1	73.01
CDY35029	Canola	cytosol	39.26	65.87
TraesCS7A01G068200.1	Wheat	cytosol, nucleus, plastid	36.96	64.82
Os08t0115800-01	Rice	nucleus	42.41	58.5
KRG97235	Soybean	nucleus	43.55	57.36
KRG97237	Soybean	nucleus	43.55	57.36
GSMUA_AchrUn_...	Banana	nucleus	41.83	57.25
Solyc10g005010.2.1	Tomato	nucleus	46.99	57.14
CDY11382	Canola	cytosol, nucleus, plastid	46.42	50.31
Bra007640.1-P	Field mustard	cytosol, nucleus, plastid	46.42	50.31
CDY25087	Canola	cytosol, nucleus, peroxisome	46.7	50.0
GSMUA_Achr3P12230_001	Banana	nucleus	48.14	49.56
CDX76597	Canola	cytosol, nucleus, peroxisome	46.42	48.8
CDX67870	Canola	nucleus	46.7	48.51
Bra003478.1-P	Field mustard	nucleus	46.7	48.51
AT3G61910.1	Thale cress	nucleus	45.85	47.9
CDY41554	Canola	nucleus	48.42	47.34
HORVU7Hr1G012730.2	Barley	cytosol, nucleus	34.38	47.06
CDX80045	Canola	nucleus	48.14	46.8
GSMUA_Achr9P24450_001	Banana	nucleus	46.99	46.72
Bra004509.1-P	Field mustard	nucleus	47.85	46.52
AT2G46770.1	Thale cress	nucleus	48.14	46.03
Solyc12g017400.1.1	Tomato	nucleus	41.55	45.45
Bra040486.1-P	Field mustard	nucleus	46.99	45.05
CDY27524	Canola	nucleus	46.7	44.78
HORVU7Hr1G075550.1	Barley	cytosol, nucleus, plastid	50.72	44.47
Solyc08g079120.1.1	Tomato	cytosol, nucleus, plastid	38.97	44.3
Zm00001d049678_P001	Maize	nucleus	47.56	43.8
TraesCS7D01G314000.2	Wheat	nucleus	51.29	43.66
TraesCS7A01G317100.1	Wheat	nucleus	51.29	43.66
Zm00001d036050_P001	Maize	cytosol, nucleus, plastid	44.99	42.78
Solyc03g083880.2.1	Tomato	nucleus	37.82	42.31
Os06t0131700-01	Rice	nucleus	47.85	42.28
KXG24274	Sorghum	nucleus	50.43	42.0
TraesCS4A01G421100.1	Wheat	nucleus	47.56	41.6
TraesCS7D01G062600.1	Wheat	cytosol, nucleus, plastid	46.99	41.52
TraesCS7A01G068300.1	Wheat	cytosol, nucleus, plastid	47.28	41.46
TraesCS4A01G420900.1	Wheat	cytosol, nucleus, plastid	47.56	41.4
Zm00001d035084_P001	Maize	nucleus	49.57	41.39
TraesCS7D01G062100.1	Wheat	cytosol, nucleus, plastid	48.14	40.98
TraesCS4A01G421200.1	Wheat	nucleus	47.28	40.74
TraesCS4A01G420200.1	Wheat	nucleus	47.56	40.69
TraesCS4A01G421000.1	Wheat	nucleus	47.85	40.63
TraesCS7A01G068000.1	Wheat	cytosol, nucleus, plastid	47.85	40.63
TraesCS4A01G420000.1	Wheat	cytosol, nucleus, plastid	45.85	40.61
TraesCS7D01G062400.1	Wheat	nucleus	46.99	40.59
TraesCS7D01G062300.1	Wheat	cytosol, nucleus, plastid	47.56	40.39
Solyc06g034340.1.1	Tomato	nucleus	39.26	40.29
Solyc06g063430.1.1	Tomato	nucleus	36.68	40.25
TraesCS4A01G419900.1	Wheat	nucleus	44.7	40.1
TraesCS4A01G420100.1	Wheat	nucleus	46.99	40.0
TraesCS7D01G063300.1	Wheat	cytosol, nucleus, plastid	46.13	39.95
TraesCS4A01G421300.1	Wheat	cytosol, nucleus, plastid	47.28	39.76
EER87784	Sorghum	cytosol, nucleus, plastid	47.85	39.02
Solyc02g084350.2.1	Tomato	nucleus	37.82	37.82
Solyc06g065410.2.1	Tomato	nucleus	34.38	37.27
HORVU7Hr1G012780.1	Barley	nucleus	47.56	37.05
Solyc11g018660.1.1	Tomato	nucleus	32.95	36.98
HORVU7Hr1G012760.6	Barley	plastid	45.56	34.72
Zm00001d045463_P001	Maize	nucleus	45.85	31.01

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003441
InterPro:IPR036093	UniProt:K4CJ00	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005
PANTHER:PTHR31989	PANTHER:PTHR31989:SF39	SUPFAM:SSF101941	EnsemblPlantsGene:Solyc08g008660.2	EnsemblPlants:Solyc08g008660.2.1	UniParc:UPI000276AE8E
SEG:seg	:	:	:	:	:

Description

NAC domain-containing protein 12 [Source:Projected from Arabidopsis thaliana (AT1G32770) UniProtKB/Swiss-Prot;Acc:Q9LPI7]

Coordinates

chr8:-:3025338..3026965

Molecular Weight (calculated)

40184.8 Da

IEP (calculated)

6.299

GRAVY (calculated)

-0.838

Length

349 amino acids

Sequence
(BLAST)

001: MNLSVNGQSQ VPPGFRFHPT EEELLHYYLR KKIANEKIDL DVIREVDLNK LEPWDIQEKC KIGSTPQNDW YLFSHKDKKY PSGSRTNRAT AAGFWKATGR
101: DKVIYGNCKR IGMRKTLVFY KGRAPHGLKL DWIMHEYRLD DISTPQHQPS LNFCASESAA LEEGWVVCRV FKKKSTLQSS SAVSKTLIHE NTNTHHDGVL
201: DQILMYMGRS SKQQQQHEIK SNNIVQQVNN NDNENIQFDN TEDGFLQLPE LVNHHQDCNF NDEMIIMSTG NDDQHYSCMI NNYQENNEAA DHKKNGPTCD
301: WLAMVASQLN GHHLEPPTNN NTTRSNDDDV EFWSYAQSST FDPLSQFTV

Best Arabidopsis Sequence Match ( AT2G46770.1 )
(BLAST)

001: MMSKSMSISV NGQSQVPPGF RFHPTEEELL QYYLRKKVNS IEIDLDVIRD VDLNKLEPWD IQEMCKIGTT PQNDWYFFSH KDKKYPTGTR TNRATAAGFW
101: KATGRDKIIY SNGRRIGMRK TLVFYKGRAP HGQKSDWIMH EYRLDDNIIS PEDVTVHEVV SIIGEASQDE GWVVCRIFKK KNLHKTLNSP VGGASLSGGG
201: DTPKTTSSQI FNEDTLDQFL ELMGRSCKEE LNLDPFMKLP NLESPNSQAI NNCHVSSPDT NHNIHVSNVV DTSFVTSWAA LDRLVASQLN GPTSYSITAV
301: NESHVGHDHL ALPSVRSPYP SLNRSASYHA GLTQEYTPEM ELWNTTTSSL SSSPGPFCHV SNGSG

Arabidopsis Description

NAC043NAC domain-containing protein 43 [Source:UniProtKB/Swiss-Prot;Acc:Q84WP6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.