Factsheet for TraesCS4A01G421200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G421100.1	Wheat	nucleus	86.67	87.97
TraesCS7A01G068200.1	Wheat	cytosol, nucleus, plastid	43.21	87.94
TraesCS4A01G420200.1	Wheat	nucleus	83.21	82.6
HORVU7Hr1G012730.2	Barley	cytosol, nucleus	51.36	81.57
TraesCS4A01G420000.1	Wheat	cytosol, nucleus, plastid	78.27	80.46
TraesCS4A01G420900.1	Wheat	cytosol, nucleus, plastid	79.26	80.05
TraesCS4A01G420100.1	Wheat	nucleus	80.74	79.76
TraesCS4A01G421000.1	Wheat	nucleus	78.52	77.37
TraesCS7A01G068300.1	Wheat	cytosol, nucleus, plastid	75.8	77.14
TraesCS4A01G419900.1	Wheat	nucleus	74.07	77.12
TraesCS7A01G068000.1	Wheat	cytosol, nucleus, plastid	76.05	74.94
TraesCS4A01G421300.1	Wheat	cytosol, nucleus, plastid	76.54	74.7
CDY72666	Canola	nucleus	29.63	73.62
HORVU7Hr1G012760.6	Barley	plastid	83.21	73.58
HORVU7Hr1G012780.1	Barley	nucleus	75.8	68.53
Os06t0131700-01	Rice	nucleus	61.23	62.78
CDY35029	Canola	cytosol	31.85	62.02
Zm00001d036050_P001	Maize	cytosol, nucleus, plastid	56.05	61.85
EER87784	Sorghum	cytosol, nucleus, plastid	59.51	56.31
KRG97237	Soybean	nucleus	36.3	55.47
KRG97235	Soybean	nucleus	36.3	55.47
Solyc10g005010.2.1	Tomato	nucleus	38.77	54.7
PGSC0003DMT400029321	Potato	nucleus	41.98	54.31
Bra010183.1-P	Field mustard	nucleus	39.01	51.3
CDY26917	Canola	nucleus	39.01	51.3
VIT_15s0048g02660.t01	Wine grape	nucleus	46.42	48.7
AT2G46770.1	Thale cress	nucleus	43.7	48.49
CDY41554	Canola	nucleus	42.47	48.18
CDY25087	Canola	cytosol, nucleus, peroxisome	38.77	48.16
CDY11382	Canola	cytosol, nucleus, plastid	38.27	48.14
Bra007640.1-P	Field mustard	cytosol, nucleus, plastid	38.27	48.14
CDX73267	Canola	cytosol	38.52	48.0
PGSC0003DMT400014872	Potato	nucleus	41.23	47.99
CDX80045	Canola	nucleus	42.47	47.91
Bra004509.1-P	Field mustard	nucleus	42.22	47.63
CDX67870	Canola	nucleus	39.26	47.32
Bra003478.1-P	Field mustard	nucleus	39.26	47.32
AT3G61910.1	Thale cress	nucleus	39.01	47.31
CDX76597	Canola	cytosol, nucleus, peroxisome	38.77	47.29
Solyc08g008660.2.1	Tomato	nucleus	40.74	47.28
TraesCS7A01G317100.1	Wheat	nucleus	47.41	46.83
PGSC0003DMT400031571	Potato	nucleus	42.47	46.49
CDY27524	Canola	nucleus	41.48	46.15
TraesCS2A01G565900.1	Wheat	cytosol, nucleus, plastid	22.96	46.04
Bra040486.1-P	Field mustard	nucleus	41.23	45.88
AT1G32770.1	Thale cress	nucleus	40.49	45.81
Bra023288.1-P	Field mustard	nucleus	40.99	45.6
CDX93819	Canola	nucleus	40.99	45.6
CDY01243	Canola	nucleus	41.48	45.28
Zm00001d045463_P001	Maize	nucleus	57.28	44.96
VIT_02s0025g02710.t01	Wine grape	nucleus	44.94	44.94
KRH47818	Soybean	nucleus	43.95	44.5
KRH06383	Soybean	nucleus	46.67	42.66
TraesCS2A01G386300.1	Wheat	cytosol, nucleus, peroxisome	35.31	42.18
TraesCS2A01G566400.1	Wheat	nucleus	28.64	41.43
TraesCS7A01G008800.1	Wheat	nucleus	34.07	41.07
TraesCS4A01G486200.1	Wheat	nucleus	34.07	41.07
TraesCS2A01G311500.1	Wheat	nucleus	33.83	40.77
TraesCS7A01G349500.1	Wheat	nucleus	37.04	40.76
TraesCS6A01G237900.1	Wheat	nucleus	34.81	40.06
TraesCS2A01G566000.1	Wheat	nucleus	28.15	38.26
TraesCS5A01G491700.1	Wheat	cytosol, mitochondrion, nucleus	33.83	37.33
TraesCS2A01G566200.1	Wheat	nucleus	27.9	37.05
TraesCS2A01G566100.1	Wheat	nucleus	28.89	36.68
TraesCS7A01G326000.1	Wheat	nucleus	27.9	36.22
TraesCS2A01G566300.1	Wheat	nucleus	28.4	35.49

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005
PANTHER:PTHR31989	PANTHER:PTHR31989:SF39	SUPFAM:SSF101941	EnsemblPlantsGene:TraesCS4A01G421200	EnsemblPlants:TraesCS4A01G421200.1	SEG:seg

Description

No Description!

Coordinates

chr4A:+:691323832..691325977

Molecular Weight (calculated)

43790.5 Da

IEP (calculated)

8.025

GRAVY (calculated)

-0.464

Length

405 amino acids

Sequence
(BLAST)

001: MSISVNGQSV VPPGFRFHPT EEELLTYYLA KKVASQRIDL DVIPDVDLNK LEPWDIQERC RIGTGPQNDW YLFSHKDKKY PTGTRTNRAT AAGFWKATGR
101: DKAIYSAAGS GLIGMRKTLV FYKGRAPHGH KSDWIMHEYR LDAAAATPGN NPANPAAGNA NYYSVSSSPM RGVAGDQSSA QEDGWVICRV FKKKNIVVQQ
201: QAGQNGGGAA ASNKLVVAGA MERSRSNCSP MVTTASDHAK VTQMQQHHDA LDHILNQYMH GRSSMTACKQ ETKPTNPSSP ALDQLINSAC HNGNSTLYEK
301: FMKLPPLEHV VPGGLLPPPT KYGCDWYTLD RLAAYELNGL SDPASAKTMK DMSIVDELGS TTAYSGGDTL QASSGTGDGD LWSLARSASS LHADLTITCF
401: NAVGC

Best Arabidopsis Sequence Match ( AT1G32770.1 )
(BLAST)

001: MADNKVNLSI NGQSKVPPGF RFHPTEEELL HYYLRKKVNS QKIDLDVIRE VDLNKLEPWD IQEECRIGST PQNDWYFFSH KDKKYPTGTR TNRATVAGFW
101: KATGRDKIIC SCVRRIGLRK TLVFYKGRAP HGQKSDWIMH EYRLDDTPMS NGYADVVTED PMSYNEEGWV VCRVFRKKNY QKIDDCPKIT LSSLPDDTEE
201: EKGPTFHNTQ NVTGLDHVLL YMDRTGSNIC MPESQTTTQH QDDVLFMQLP SLETPKSESP VDQSFLTPSK LDFSPVQEKI TERPVCSNWA SLDRLVAWQL
301: NNGHHNPCHR KSFDEEEENG DTMMQRWDLH WNNDDNVDLW SSFTESSSSL DPLLHLSV

Arabidopsis Description

NAC012NAC domain-containing protein 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPI7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.