Factsheet for TraesCS4A01G420100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G421000.1	Wheat	nucleus	88.05	87.83
TraesCS4A01G420200.1	Wheat	nucleus	87.32	87.75
TraesCS4A01G420000.1	Wheat	cytosol, nucleus, plastid	84.15	87.56
TraesCS4A01G420900.1	Wheat	cytosol, nucleus, plastid	83.66	85.54
TraesCS7D01G062600.1	Wheat	cytosol, nucleus, plastid	81.46	84.56
TraesCS4A01G419900.1	Wheat	nucleus	79.76	84.06
TraesCS7A01G068200.1	Wheat	cytosol, nucleus, plastid	40.73	83.92
TraesCS7A01G068300.1	Wheat	cytosol, nucleus, plastid	79.76	82.16
HORVU7Hr1G012730.2	Barley	cytosol, nucleus	50.49	81.18
TraesCS4A01G421200.1	Wheat	nucleus	79.76	80.74
TraesCS4A01G421100.1	Wheat	nucleus	77.07	79.2
TraesCS7A01G068000.1	Wheat	cytosol, nucleus, plastid	75.61	75.43
CDY72666	Canola	nucleus	29.76	74.85
TraesCS4A01G421300.1	Wheat	cytosol, nucleus, plastid	74.63	73.73
HORVU7Hr1G012760.6	Barley	plastid	77.32	69.21
HORVU7Hr1G012780.1	Barley	nucleus	73.17	66.96
CDY35029	Canola	cytosol	31.46	62.02
Zm00001d036050_P001	Maize	cytosol, nucleus, plastid	55.12	61.58
Os06t0131700-01	Rice	nucleus	58.29	60.51
EER87784	Sorghum	cytosol, nucleus, plastid	58.78	56.31
KRG97237	Soybean	nucleus	36.1	55.85
KRG97235	Soybean	nucleus	35.85	55.47
Solyc10g005010.2.1	Tomato	nucleus	38.54	55.05
PGSC0003DMT400029321	Potato	nucleus	41.46	54.31
CDY26917	Canola	nucleus	38.54	51.3
Bra010183.1-P	Field mustard	nucleus	38.54	51.3
Bra007640.1-P	Field mustard	cytosol, nucleus, plastid	38.54	49.07
CDY11382	Canola	cytosol, nucleus, plastid	38.54	49.07
CDX73267	Canola	cytosol	38.54	48.62
VIT_15s0048g02660.t01	Wine grape	nucleus	45.61	48.45
AT3G61910.1	Thale cress	nucleus	39.27	48.2
CDX76597	Canola	cytosol, nucleus, peroxisome	39.02	48.19
CDY25087	Canola	cytosol, nucleus, peroxisome	38.05	47.85
PGSC0003DMT400014872	Potato	nucleus	40.49	47.7
AT2G46770.1	Thale cress	nucleus	42.44	47.67
CDY41554	Canola	nucleus	41.46	47.62
CDX80045	Canola	nucleus	41.46	47.35
Bra004509.1-P	Field mustard	nucleus	41.22	47.08
CDX67870	Canola	nucleus	38.54	47.02
Bra003478.1-P	Field mustard	nucleus	38.54	47.02
Solyc08g008660.2.1	Tomato	nucleus	40.0	46.99
Bra040486.1-P	Field mustard	nucleus	41.22	46.43
CDY27524	Canola	nucleus	41.22	46.43
PGSC0003DMT400031571	Potato	nucleus	41.46	45.95
Bra023288.1-P	Field mustard	nucleus	40.73	45.88
CDX93819	Canola	nucleus	40.73	45.88
AT1G32770.1	Thale cress	nucleus	40.0	45.81
CDY01243	Canola	nucleus	41.22	45.55
TraesCS2A01G565900.1	Wheat	cytosol, nucleus, plastid	22.44	45.54
TraesCS7A01G317100.1	Wheat	nucleus	45.12	45.12
Zm00001d045463_P001	Maize	nucleus	56.34	44.77
KRH47818	Soybean	nucleus	42.93	44.0
VIT_02s0025g02710.t01	Wine grape	nucleus	43.41	43.95
KRH06383	Soybean	nucleus	44.88	41.53
TraesCS2A01G311500.1	Wheat	nucleus	33.66	41.07
TraesCS2A01G566400.1	Wheat	nucleus	27.8	40.71
TraesCS2A01G386300.1	Wheat	cytosol, nucleus, peroxisome	33.41	40.41
TraesCS7A01G349500.1	Wheat	nucleus	36.1	40.22
TraesCS7A01G008800.1	Wheat	nucleus	32.44	39.58
TraesCS4A01G486200.1	Wheat	nucleus	32.44	39.58
TraesCS6A01G237900.1	Wheat	nucleus	33.17	38.64
TraesCS2A01G566000.1	Wheat	nucleus	27.32	37.58
TraesCS5A01G491700.1	Wheat	cytosol, mitochondrion, nucleus	32.93	36.78
TraesCS2A01G566200.1	Wheat	nucleus	27.07	36.39
TraesCS2A01G566100.1	Wheat	nucleus	28.05	36.05
TraesCS7A01G326000.1	Wheat	nucleus	27.07	35.58
TraesCS2A01G566300.1	Wheat	nucleus	27.56	34.88

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005
PANTHER:PTHR31989	PANTHER:PTHR31989:SF39	SUPFAM:SSF101941	EnsemblPlantsGene:TraesCS4A01G420100	EnsemblPlants:TraesCS4A01G420100.1	SEG:seg

Description

No Description!

Coordinates

chr4A:-:690884353..690886971

Molecular Weight (calculated)

44344.0 Da

IEP (calculated)

7.671

GRAVY (calculated)

-0.468

Length

410 amino acids

Sequence
(BLAST)

001: MSISVNGQSV VPPGFRFHPT EEELLTYYLA KKVASQRIDL DVIPDVDLNK LEPWDIQERC RIGTGPQNDW YLFSHKDKKY PTGTRTNRAT TAGFWKATGR
101: DKAIYSAAGS GRIGMRKTLV YYKGRAPHGH KSDWIMHEYR LDDAVAPPTN PVFAAGDASS YYSGISSPVH DMAGGQSSST QEDGWVICRV FKKKNIVVQH
201: QAGQSGGGRG AASNKLVGAG AMKHSQSNCS STVTPASANA KAQMQQHLPH SDDALDHILN YMGRSSTASC RQETKPPNPS SSALDHLINS ACRNGTSTLY
301: DKFMKLPPLE HVVPGGLLPP PNEYGRDWDA LDRLAAYELN GLSNPALAET TTDMSYIADE LGGVTSYSAG GTLHTPSVTV AGDGDLWSLA RPVSSLHADL
401: TMTWFKAVGC

Best Arabidopsis Sequence Match ( AT3G61910.1 )
(BLAST)

001: MNISVNGQSQ VPPGFRFHPT EEELLKYYLR KKISNIKIDL DVIPDIDLNK LEPWDIQEMC KIGTTPQNDW YFYSHKDKKY PTGTRTNRAT TVGFWKATGR
101: DKTIYTNGDR IGMRKTLVFY KGRAPHGQKS DWIMHEYRLD ESVLISSCGD HDVNVETCDV IGSDEGWVVC RVFKKNNLCK NMISSSPASS VKTPSFNEET
201: IEQLLEVMGQ SCKGEIVLDP FLKLPNLECH NNTTITSYQW LIDDQVNNCH VSKVMDPSFI TSWAALDRLV ASQLNGPNSY SIPAVNETSQ SPYHGLNRSG
301: CNTGLTPDYY IPEIDLWNEA DFARTTCHLL NGSG

Arabidopsis Description

NAC066NAC domain-containing protein 66 [Source:UniProtKB/Swiss-Prot;Acc:Q9M274]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.