Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES04857 | Sorghum | nucleus | 87.11 | 88.37 |
| CDY70728 | Canola | nucleus | 36.96 | 72.07 |
| Zm00001d048456_P001 | Maize | nucleus | 29.8 | 71.23 |
| Os02t0252200-01 | Rice | nucleus | 66.19 | 64.35 |
| Zm00001d046126_P001 | Maize | cytosol, nucleus, plastid | 61.89 | 60.5 |
| Zm00001d045600_P001 | Maize | nucleus | 23.78 | 59.71 |
| GSMUA_Achr2P20020_001 | Banana | cytosol, nucleus, plastid | 48.14 | 59.15 |
| Zm00001d051294_P001 | Maize | cytosol | 29.51 | 58.86 |
| Zm00001d037029_P001 | Maize | nucleus | 61.6 | 58.74 |
| GSMUA_Achr10P... | Banana | nucleus | 46.99 | 56.94 |
| VIT_19s0085g01210.t01 | Wine grape | nucleus | 50.72 | 56.73 |
| KRH13825 | Soybean | cytosol, nucleus, peroxisome | 52.44 | 56.13 |
| KRH43624 | Soybean | cytosol, nucleus, peroxisome | 52.44 | 55.79 |
| GSMUA_Achr10P... | Banana | nucleus | 49.28 | 55.48 |
| PGSC0003DMT400025026 | Potato | nucleus | 49.86 | 53.7 |
| Solyc12g017400.1.1 | Tomato | nucleus | 48.14 | 52.66 |
| GSMUA_Achr3P03500_001 | Banana | nucleus | 31.23 | 50.23 |
| CDY22285 | Canola | nucleus | 45.85 | 46.11 |
| CDY71976 | Canola | nucleus | 45.27 | 45.27 |
| Bra008423.1-P | Field mustard | nucleus | 44.99 | 44.99 |
| Bra035127.1-P | Field mustard | nucleus | 45.85 | 44.57 |
| CDX87372 | Canola | nucleus | 45.85 | 44.44 |
| CDX88550 | Canola | nucleus | 45.85 | 44.08 |
| CDY70056 | Canola | nucleus | 44.99 | 43.98 |
| Bra003602.1-P | Field mustard | nucleus | 44.7 | 43.7 |
| AT1G79580.4 | Thale cress | nucleus | 45.56 | 42.86 |
| Zm00001d003583_P001 | Maize | nucleus | 37.82 | 40.49 |
| Zm00001d002828_P001 | Maize | cytosol | 39.54 | 40.12 |
| Zm00001d034984_P001 | Maize | nucleus | 31.81 | 40.07 |
| Zm00001d017396_P001 | Maize | nucleus | 24.07 | 39.44 |
| Zm00001d036050_P001 | Maize | cytosol, nucleus, plastid | 40.11 | 38.15 |
| Zm00001d002934_P001 | Maize | nucleus | 35.82 | 38.11 |
| Zm00001d025483_P001 | Maize | nucleus | 36.68 | 38.1 |
| Zm00001d050039_P001 | Maize | nucleus | 32.09 | 37.97 |
| Zm00001d049678_P001 | Maize | nucleus | 40.69 | 37.47 |
| Zm00001d027459_P001 | Maize | nucleus | 37.25 | 34.3 |
| Zm00001d035084_P001 | Maize | nucleus | 40.97 | 34.21 |
| Zm00001d045463_P001 | Maize | nucleus | 40.69 | 27.52 |
Protein Annotations
| EntrezGene:103626984 | MapMan:15.5.17 | Gene3D:3.30.310.150 | UniProt:A0A1D6H5I5 | ProteinID:AQK70082.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003441 | InterPro:IPR036093 | InterPro:NAC-dom | InterPro:NAC_dom_sf |
| PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31989 | PANTHER:PTHR31989:SF111 | SUPFAM:SSF101941 | UniParc:UPI0004DE8B78 |
| EnsemblPlantsGene:Zm00001d016119 | EnsemblPlants:Zm00001d016119_P001 | EnsemblPlants:Zm00001d016119_T001 | SEG:seg | : | : |
Description
NAC-transcription factor 19Protein SOMBRERO
Coordinates
chr5:+:145523324..145525028
Molecular Weight (calculated)
39211.6 Da
IEP (calculated)
7.517
GRAVY (calculated)
-0.501
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MHPSCSPLAV PPGFRFHPTD EELLYYYLRK KVAYEPIDLD VIREVDLNKL EPWDLKDRCR IGTAEPQDEW YFFSHKDRKY PTGTRTNRAT TAGFWKATGR
101: DKAIFLGNAG RRIGLRKTLV FYTGRAPHGK KTDWIMHEYR LNDDNVEVPP ITEDGWVVCR VFKKKSIQRG FDQLGTASAG DDDELQSFHS PGGVMTTLAE
201: QKHGLLHQLT HGGVVVPAFD PCMNLPHLTS AEGQLAATAA FTSGTSAVAM NLLDMGRCSR HNHNHNMLKM TTTPCGSASD MPLNSGERFG AAADWSILDK
301: LLASHQNLDQ LFHCKFGGTT FAVPHHYQQE MQQQHMEISA SSLHRLPLH
101: DKAIFLGNAG RRIGLRKTLV FYTGRAPHGK KTDWIMHEYR LNDDNVEVPP ITEDGWVVCR VFKKKSIQRG FDQLGTASAG DDDELQSFHS PGGVMTTLAE
201: QKHGLLHQLT HGGVVVPAFD PCMNLPHLTS AEGQLAATAA FTSGTSAVAM NLLDMGRCSR HNHNHNMLKM TTTPCGSASD MPLNSGERFG AAADWSILDK
301: LLASHQNLDQ LFHCKFGGTT FAVPHHYQQE MQQQHMEISA SSLHRLPLH
001: MEIGSSSTVA GGGQLSVPPG FRFHPTEEEL LYYYLKKKVS YEPIDLDVIR EVDLNKLEPW ELKEKCRIGS GPQNEWYFFS HKDKKYPTGT RTNRATAAGF
101: WKATGRDKSI HLNSSKKIGL RKTLVFYTGR APHGQKTEWI MHEYRLDDSE NEIQEDGWVV CRVFKKKNHF RGFHQEQEQD HHHHHQYIST NNDHDHHHHI
201: DSNSNNHSPL ILHPLDHHHH HHHIGRQIHM PLHEFANTLS HGSMHLPQLF SPDSAAAAAA AAASAQPFVS PINTTDIECS QNLLRLTSNN NYGGDWSFLD
301: KLLTTGNMNQ QQQQQVQNHQ AKCFGDLSNN DNNDQADHLG NNNGGSSSSP VNQRFPFHYL GNDANLLKFP K
101: WKATGRDKSI HLNSSKKIGL RKTLVFYTGR APHGQKTEWI MHEYRLDDSE NEIQEDGWVV CRVFKKKNHF RGFHQEQEQD HHHHHQYIST NNDHDHHHHI
201: DSNSNNHSPL ILHPLDHHHH HHHIGRQIHM PLHEFANTLS HGSMHLPQLF SPDSAAAAAA AAASAQPFVS PINTTDIECS QNLLRLTSNN NYGGDWSFLD
301: KLLTTGNMNQ QQQQQVQNHQ AKCFGDLSNN DNNDQADHLG NNNGGSSSSP VNQRFPFHYL GNDANLLKFP K
Arabidopsis Description
SMBProtein SOMBRERO [Source:UniProtKB/Swiss-Prot;Acc:Q9MA17]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.