Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g017400.1.1 | Tomato | nucleus | 90.12 | 91.54 |
| CDY70728 | Canola | nucleus | 42.9 | 77.65 |
| VIT_19s0085g01210.t01 | Wine grape | nucleus | 66.05 | 68.59 |
| Os06t0530400-01 | Rice | cytosol, nucleus, peroxisome | 42.59 | 68.32 |
| PGSC0003DMT400055552 | Potato | cytosol, nucleus, peroxisome | 31.17 | 68.24 |
| GSMUA_Achr2P20020_001 | Banana | cytosol, nucleus, plastid | 57.1 | 65.14 |
| KRH13825 | Soybean | cytosol, nucleus, peroxisome | 64.81 | 64.42 |
| KRH43624 | Soybean | cytosol, nucleus, peroxisome | 64.51 | 63.72 |
| GSMUA_Achr10P... | Banana | nucleus | 58.33 | 60.97 |
| GSMUA_Achr10P... | Banana | nucleus | 50.62 | 56.94 |
| CDY71976 | Canola | nucleus | 60.49 | 56.16 |
| Bra008423.1-P | Field mustard | nucleus | 60.19 | 55.87 |
| CDY22285 | Canola | nucleus | 59.26 | 55.33 |
| CDX87372 | Canola | nucleus | 60.8 | 54.72 |
| Bra035127.1-P | Field mustard | nucleus | 60.49 | 54.6 |
| CDY70056 | Canola | nucleus | 59.88 | 54.34 |
| CDX88550 | Canola | nucleus | 60.8 | 54.27 |
| Bra003602.1-P | Field mustard | nucleus | 59.57 | 54.06 |
| KXG20105 | Sorghum | cytosol, nucleus, plastid | 58.95 | 53.8 |
| AT1G79580.4 | Thale cress | nucleus | 60.49 | 52.83 |
| TraesCS7D01G329200.1 | Wheat | nucleus | 59.88 | 52.72 |
| TraesCS7A01G349500.1 | Wheat | nucleus | 59.88 | 52.72 |
| Zm00001d046126_P001 | Maize | cytosol, nucleus, plastid | 58.02 | 52.66 |
| Zm00001d037029_P001 | Maize | nucleus | 58.95 | 52.19 |
| HORVU7Hr1G079500.1 | Barley | nucleus | 59.57 | 52.16 |
| TraesCS7B01G233300.1 | Wheat | nucleus | 59.88 | 52.15 |
| GSMUA_Achr3P03500_001 | Banana | nucleus | 34.88 | 52.07 |
| Os02t0252200-01 | Rice | nucleus | 55.25 | 49.86 |
| Zm00001d016119_P001 | Maize | cytosol, nucleus, plastid | 53.7 | 49.86 |
| EES04857 | Sorghum | nucleus | 52.47 | 49.42 |
| PGSC0003DMT400029321 | Potato | nucleus | 44.44 | 46.01 |
| PGSC0003DMT400014872 | Potato | nucleus | 44.14 | 41.09 |
| PGSC0003DMT400012079 | Potato | nucleus | 37.65 | 40.94 |
| PGSC0003DMT400031571 | Potato | nucleus | 45.99 | 40.27 |
| PGSC0003DMT400009136 | Potato | nucleus | 41.67 | 38.9 |
| OQU76499 | Sorghum | nucleus | 34.26 | 38.81 |
| PGSC0003DMT400002318 | Potato | nucleus | 37.04 | 37.97 |
| PGSC0003DMT400067086 | Potato | nucleus | 36.11 | 35.56 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:GO:0003002 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009834 | GO:GO:0009987 | GO:GO:0010455 | GO:GO:0030154 | GO:GO:0048829 | InterPro:IPR003441 |
| InterPro:IPR036093 | UniProt:M1AKX2 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | EnsemblPlantsGene:PGSC0003DMG400009665 |
| PGSC:PGSC0003DMG400009665 | EnsemblPlants:PGSC0003DMT400025026 | PFscan:PS51005 | PANTHER:PTHR31989 | PANTHER:PTHR31989:SF16 | InterPro:SMB |
| SUPFAM:SSF101941 | UniParc:UPI000296F868 | SEG:seg | : | : | : |
Description
NAC domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400009665]
Coordinates
chr12:-:11035465..11038147
Molecular Weight (calculated)
37123.3 Da
IEP (calculated)
7.319
GRAVY (calculated)
-0.739
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGSANGHLS VPPGFRFHPT DEELLYYYLR KKVSYEAIDL DVIREVDLNK LEPWDLKEIC RIGSGPQNEW YFFSHKDKKY PTGTRTNRAT TAGFWKATGR
101: DKAIYLSNSK RIGMRKTLVF YTGRAPHGQK TDWIMHEYRL DDNNAEVEEE GWVVCRVFKK KNYTRGFQHD IGDQDHEEQL PFTDHMKAGS SKQNIQTAAS
201: CYDNYQSSFD GSMHLPQLLS PDLTLPCPSL ISPLSNHIEC STTHHNHNLL RLTSTSGPNF NFSQQHDKFS GDWSFLDKLL ASSNQGVALQ SQAATTDLVN
301: PTSSQKYPIF HHHTFDHDLL KFSK
101: DKAIYLSNSK RIGMRKTLVF YTGRAPHGQK TDWIMHEYRL DDNNAEVEEE GWVVCRVFKK KNYTRGFQHD IGDQDHEEQL PFTDHMKAGS SKQNIQTAAS
201: CYDNYQSSFD GSMHLPQLLS PDLTLPCPSL ISPLSNHIEC STTHHNHNLL RLTSTSGPNF NFSQQHDKFS GDWSFLDKLL ASSNQGVALQ SQAATTDLVN
301: PTSSQKYPIF HHHTFDHDLL KFSK
001: MEIGSSSTVA GGGQLSVPPG FRFHPTEEEL LYYYLKKKVS YEPIDLDVIR EVDLNKLEPW ELKEKCRIGS GPQNEWYFFS HKDKKYPTGT RTNRATAAGF
101: WKATGRDKSI HLNSSKKIGL RKTLVFYTGR APHGQKTEWI MHEYRLDDSE NEIQEDGWVV CRVFKKKNHF RGFHQEQEQD HHHHHQYIST NNDHDHHHHI
201: DSNSNNHSPL ILHPLDHHHH HHHIGRQIHM PLHEFANTLS HGSMHLPQLF SPDSAAAAAA AAASAQPFVS PINTTDIECS QNLLRLTSNN NYGGDWSFLD
301: KLLTTGNMNQ QQQQQVQNHQ AKCFGDLSNN DNNDQADHLG NNNGGSSSSP VNQRFPFHYL GNDANLLKFP K
101: WKATGRDKSI HLNSSKKIGL RKTLVFYTGR APHGQKTEWI MHEYRLDDSE NEIQEDGWVV CRVFKKKNHF RGFHQEQEQD HHHHHQYIST NNDHDHHHHI
201: DSNSNNHSPL ILHPLDHHHH HHHIGRQIHM PLHEFANTLS HGSMHLPQLF SPDSAAAAAA AAASAQPFVS PINTTDIECS QNLLRLTSNN NYGGDWSFLD
301: KLLTTGNMNQ QQQQQVQNHQ AKCFGDLSNN DNNDQADHLG NNNGGSSSSP VNQRFPFHYL GNDANLLKFP K
Arabidopsis Description
SMBProtein SOMBRERO [Source:UniProtKB/Swiss-Prot;Acc:Q9MA17]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.